G202175 (nudt1,LOC107592807,LOC107674605,LOC107758325)


Basic Information

Item Value
gene id G202175
gene name nudt1,LOC107592807,LOC107674605,LOC107758325
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35805564 ~ 35809425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274468
tggtgacacccatgtgccttactagtgttgcataatgtgccttataatccagtgcactttatatataaaaatggacgtttattgataatgtgccttataatacgatgcactttatagtgcgaaaaatatggaacaacaaaaacaaactcaAAAGCGAAGTTAAGAGTTCATCTCCGCTAGTGTGGACCACCTGATGATGGGGCATCTTTTGATGAGCCCAGAACTCCTTCACTTCCCTCAACAGTGTGTGAACGGGGGGCCATCACTCCCTCTGATAGTGTGAAGAGGACAGTCAGTAGAGGTGTGAAAATCTGATCAGATCTCCTGCACCTCGTCCAGTTTGTGTTCCAATATCACATCGTGACCCTGGAATTTAAAGTATCCCAAGAACTTCTTCCTCTGTAGCATCAGCGGGAACCACAGCACGTCATCCGCCCACATCTGACTGAAGGGGATTTTATCAATGTCAAACCACTGAGGCttcatttCCTCAGATTCGGTGGGCTCGCCATTATAAGAGTCAGCTCTGAATATGTGGACGTCCATCAGCTCTGTATCTCCAACAAACTCAAACGTGATATTTCCAATCTTGTGTAGAGTATCTACAGTAAGCCCACTTTCCTCCAGCAGTTCCCGTCGAGCTGCCTGCTCTATGCTTTCTCCTGTCTGGACTTTCCCCCCGAAGCCGTTCCACTTCCCCGCCCCGAAGCCCCTCTTCTTCATACCCAGCAGCACCCGCTCGGGCTGCACCACCAGCACCAGAGTCAGCAGCTTCCTTGTGAACATTTGAATGAAAACACGGTCCACGTGTACAGTGTCTAAAATCCTgctttaatacagtttaatacaaaataaccCCG

Function

symbol description
nudt1 Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1).

NR:

description
7,8-dihydro-8-oxoguanine triphosphatase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274468 True 860 lncRNA 0.47 4 35805564 35809425

Neighbor

gene id symbol gene type direction distance location
snx8 snx8,LOC107758331,LOC107592787 coding upstream 6564 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 189753 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 419479 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 432963 35356753 ~ 35372601 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 469485 35263070 ~ 35336079 (+)
mrm2 mrm2 coding downstream 1612 35811037 ~ 35818586 (+)
zfand2a zfand2a,LOC107568938 coding downstream 756782 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 842409 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 1068398 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 1142482 36951907 ~ 36973852 (+)
G202174 NA non-coding upstream 10421 35794260 ~ 35795143 (+)
G202171 NA non-coding upstream 31645 35773299 ~ 35773919 (+)
G202163 NA non-coding upstream 125363 35651071 ~ 35680201 (+)
G202149 NA non-coding upstream 282794 35522542 ~ 35522770 (+)
G202147 NA non-coding upstream 294652 35510703 ~ 35510912 (+)
G202178 NA non-coding downstream 9989 35819414 ~ 35820135 (+)
G202208 NA non-coding downstream 22012 35831437 ~ 35898406 (+)
G202214 NA non-coding downstream 66921 35876346 ~ 35903753 (+)
G202234 NA non-coding downstream 154373 35963798 ~ 35964045 (+)
G202238 NA non-coding downstream 224015 36033440 ~ 36033716 (+)
LOC111195488 NA other upstream 680946 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1990578 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2530657 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2827654 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2877645 32923528 ~ 32927919 (+)
G202336 NA other downstream 780023 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1173898 36983323 ~ 36993332 (+)

Expression


Co-expression Network