G202208


Basic Information

Item Value
gene id G202208
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35831437 ~ 35898406 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274519
aaaaaaaaaaaaaaaaaagaatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagtg
>TU274520
aatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274519 False 297 lncRNA 0.02 2 35831437 35898406
TU274520 True 356 lncRNA 0.02 2 35897781 35898406

Neighbor

gene id symbol gene type direction distance location
mrm2 mrm2 coding upstream 12851 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 32437 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 215626 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 445352 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 458836 35356753 ~ 35372601 (+)
zfand2a zfand2a,LOC107568938 coding downstream 667801 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 753428 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 979417 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 1053501 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 1112289 37010695 ~ 37025525 (+)
G202178 NA non-coding upstream 11302 35819414 ~ 35820135 (+)
G202175 nudt1,LOC107592807,LOC107674605,LOC107758325 non-coding upstream 22012 35805564 ~ 35809425 (+)
G202174 NA non-coding upstream 36294 35794260 ~ 35795143 (+)
G202171 NA non-coding upstream 57518 35773299 ~ 35773919 (+)
G202163 NA non-coding upstream 151236 35651071 ~ 35680201 (+)
G202234 NA non-coding downstream 65392 35963798 ~ 35964045 (+)
G202238 NA non-coding downstream 135034 36033440 ~ 36033716 (+)
G202259 NA non-coding downstream 210169 36108575 ~ 36108834 (+)
G202268 NA non-coding downstream 260572 36158978 ~ 36262271 (+)
G202269 NA non-coding downstream 298186 36196592 ~ 36329696 (+)
LOC111195488 NA other upstream 706819 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 2016451 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2556530 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2853527 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2903518 32923528 ~ 32927919 (+)
G202336 NA other downstream 691042 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1084917 36983323 ~ 36993332 (+)

Expression


Co-expression Network