G202270


Basic Information

Item Value
gene id G202270
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36243616 ~ 36246643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274602
CTTGATTGGTTCATTTAGTTCATCGCCACAGTTCAAGTTCGTATCGTATAGTTTTTAAGATCCTCCAacgcacacacagcacacaataAATTCACCCCGAGGGTCTGAAACGTCTGCACGGGTGTTCCCTTTTCCTTTATTTCACAGTAGTTGTCTGAAAGCAGATAACATagtaataagaaataaaaaaaaacactttattgtgCTCTTGGTTGTCTCTGGATGTAGGTCAGAGACAGCTGCTTTCGTTCACATTGTCCAAACAATtctaacgttttttttttttatgagataTAGGAGTGCTACAATATGCAATATAAAACATGTAGGTTACTCGCTAGATTGCCTATAAATCGGACAGCTCTCAGAATCTATTGAAatgctctttttaaaaaaaatgacaacaaaatgaagacttttttttttcttttccaaaaaacatcaacacttgaaagaaaaagaaaaaatacagttataCATATATTCCAGAATTTTAAGGCGGTTGAAATAAGAAATCGGATGTCCCAGTCACTTCCTGTAACACTTCCTGTTCAGGTGATGTACAAATCCAGTGGTGTCATGTCAGGTCAGGTCAGGGTAGGaggaaatcaggaaatcagtctctctttctttctttttctctcgttCTATCTCTTTATTCGTGCACTCTGTAGTCTTTCTTCCACGACTGATGCTCTGGATTCAGCAGAACCGATACCTTCCCCAATCGGCCACTTTCAACATTTACAAAAGCGTTTGCCGAGAGTCTGCCGAGCAGTAAAACAGCAGTAGAAAACACCTAAATGGAGCCCATAGATCTATTAGAAATGTCTATTCTATTCCTTTTGATTGTGGAACTGGTTGGTTTACTGGTTGGTACCGTCACTGGTCCAGGGGCTGAAAGAGAACTGGCCAGTGAATAGGAATAAGAAACATGCAGCTGTGAAAAGCGCCGCATCATACCTTCATagactgtatgtaatacattCATCCTCAGGGCTGGAGAAGAGAAGCAGGAGCAGAAGAAACATCTGCAGGGAAATGGGATGAGCTGCCACCCTTTGGTTGACCACCAGATACTGTGTAAAACTGTATGTCAGTATTACGGTAgtcttcaaaaaataaaaatacattaaaataatataaaaataaaaatagggcCAAATGGGAAGATGACTAAtgggcaaaacattaaaaaaaattgtaaactgCAAAATGTATGAAATTGAATTGATTTCACTGAGAAGGTGTTTTATCTGTGTTATCACGGTCATGTCTCTTCAGCCAGTCATTTATCAATtacatatcaatatttttatggtTCATACTCTTTCCCAGTCTAAAGGCACATTCACAGcaagtacagttttttttcagagtAGTAGAATCTTAATACTCAGTTTTAATAGAGTTTTAATACTCAATGGGCcccattttagtgatctatagcgtcCAATCAATCAATTACGCATCGCACAGCAATATTAAGGGTGTATCGATGTGTATTTGCTattgtgagggtgcaaaaaaatacgccttgccagctcaaaatgtgcaaaaggcatgagcttattctctaaattaatctaaattaaagCGTGTGTTTTGGGATTAACttataaaactaataaactaatcagtgtgtcactttttattccctttaagaggcaggtgagctctgactttggcgttttttctttttttttttttacttaacagcgcagtgcttttGCACGTCTAAGCAAAAAAACCTGACCTGCGTGTTCAAGCTGTAAAAGTTTGTCAGCAGTTCTTTTAACGgaaaagcaatgttattttattctttattatgtttattgttgatggttttaatcggtcagtggcgcacctgtattttcttGCCGCCCAGATAGAAACACTATTTTAAAGGCGCAGGAAGAAGGTAGGCGGGAAAATAGACTTGTTAAgggggtgtaagataacaaGGAGCATCGTGACATGCCTTGTGCCGTGTGTAGCCTACGTTAGGGAACAAGTCTGTAAATATGGCTAGAAACTTCACAGCTATCATAAGTTCCCACTCTTTCGTTTTCTCTAATGCCTTTCCACATTGCTTTTAACCCATTACACACATTAATTACACCAGATTTagcaaatgttttcttttttctttttattattttaaataatagtgTAAATAGCCACTAtctataaatgtgtttgttggTTTTCAAAACTTGATATGCTTTTTTGTCGTCTGAAAAAACAGGACTTGGTGTGAAATTGCATTTAAACTGCGTCATTCAGATGTCTCTAAAAGACCAATCTCTCTCACTATGTCATTACAACacacatatgtatatatatatatatataagtacacAACCTGCCCTGTCTTCTCCAAGTTTGTAATATTGTGCATTTTGTTTGGTgacatgaataaagaaaataacaaaagcaGGCTTAGAATTAAGGTCAATTTGAGGGGGAAAGAAATCCACCATTCCAGAAACCAGTGCAATTTTACCCATCATGACACTCAAACATTCATTTAGAACAAATAATATCACAGGAGCTGACTCCAAAAATCCATGATCTAAACCTGAATCATacatgtcatatatatatatttctcttctTTTAACCAGCAAACCTTGCAAATATAGAAACACTGTCTGTACATTAGTCCCTTTGTATTTATAACtcaaatatatagagagaacTGTTCATTAATTAGTGTACAGTGAGAAGAAATACAAAGTTTTCAGAAGATGTCTGTCGTTgtagttttctctctcttttttttttttttcttgttttttgtttgtttcctcACCGTACACAGTAGCAAATCCAGTGTCACAGGACTTGGCCATGCGGAACCAAATACTTGTAATCCACTTGAACATAGATATTTTAAATTGGAGGTGTGTTCTCTTCTTGTTGATTAAAGTATTAAATGTCCTTTAATTTTGGTAAACTCACAAAACTAACTTTTATTCCCTATAGCCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274602 True 2993 lncRNA 0.36 2 36243616 36246643

Neighbor

gene id symbol gene type direction distance location
mrm2 mrm2 coding upstream 425030 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 444616 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 627805 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 857531 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 871015 35356753 ~ 35372601 (+)
zfand2a zfand2a,LOC107568938 coding downstream 319564 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 405191 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 631180 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 705264 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 764052 37010695 ~ 37025525 (+)
G202259 NA non-coding upstream 134782 36108575 ~ 36108834 (+)
G202238 NA non-coding upstream 209900 36033440 ~ 36033716 (+)
G202234 NA non-coding upstream 279571 35963798 ~ 35964045 (+)
G202214 NA non-coding upstream 339863 35876346 ~ 35903753 (+)
G202208 NA non-coding upstream 345210 35831437 ~ 35898406 (+)
G202307 NA non-coding downstream 162937 36409580 ~ 36470249 (+)
G202311 NA non-coding downstream 269005 36515648 ~ 36515928 (+)
G202341 NA non-coding downstream 425348 36671991 ~ 36672416 (+)
LOC111195542 NA non-coding downstream 634717 36881360 ~ 36914738 (+)
G202394 NA non-coding downstream 784580 37031223 ~ 37032350 (+)
LOC111195488 NA other upstream 1118998 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 2428630 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2968709 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 3265706 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 3315697 32923528 ~ 32927919 (+)
G202336 NA other downstream 342805 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 736680 36983323 ~ 36993332 (+)

Expression


Co-expression Network