G202406


Basic Information

Item Value
gene id G202406
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 37061255 ~ 37063186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274756
tcaCAGATTGTGTCAATGTTTATAGTACAAATCCCTCATAAGCCATATACAGTATTGtaacaaaaaccttgtatctcctaaatgacaattttacagaaaaaatggatggtagagaaaaaatataaaatattttttggagcatttctcatCATAAAATTCagatacaatgtaaaaaagaaaaaaaaaactactgttatatttacattatgtgcaatgcaaaaaaagtgaaaagtgaaaaatggAGATAGAAGGTTTTTGCGTATCAGTGACATTGGGCCtcatttactaaacaaaaacatatattttattttttacagtttttataaaGATTCTGAcatgtatgttttttcttttctaggACTTGTCCTATTTACAAGGATTTACAGTGATTTACATGATTTTTTActatacattgtaaatgaggctCAATATCATATTTAGATACATACattgtttaaacagtttttggacattattaatattaaatgtgaaTGACATAagcagtatatttttatatcatttttTTGTCTGTTTGGACCTGTACtagaatatacagtaccagtcaaaagtttacttttttcctatattgtaaaatgaatagtaaagtcaataagactatgaaggaacacgtaaggaatcatgtagtaacttaaaagtgttaaacaaactaaaaaataatctgtgaagcatttaggtgctcttatctggggagctgttaacttgtggtttctgaggctgctaactctgattaacttatcctgtacaacagaggaaattcTTGCTCTTCcattcctggggtggtcctgatgagagccagttttatcataacatttttgatagtGTTTGCGACTGCAGttgccataatatgtattaatacagtactcaaatagagctattcactgtattttatgtatattatgtatattaccTACTCTACAACTacttttacaactgatgctctcaaagactttattaagagacaagaaattcaggtaattaactcttgatgagttcagcacagctgttaactgaaagcctgaattccaggtgactctacctcataaaactggaTGAGAATCAAAGCTTTCATTAGAAATTCTActttgatattttgtttttgtttaatatttttttgtttacttcaaatttctttttttcttttttttttttaaaagaatgctgctgctgcactgacctgtgggatatatcGGGTCTCTTGCATTCATTGAGTGTGTATGTGATTCCACCCAGAAGCCACCAGTCGtgatcattaccactcactgtaCTTCGCTACTGTCCACTGTGCTAAGTTGTAGTTTGATAACAATTTAGAGAAAGGTATCGAAAAAAATATCGTTATTATTGGTATCGGTACCAAATTCGAATTCAATGTATTGTATCGATACggatacccagccctagtgcTAAGTGTTAAGTAATGCCCTCTATGACAGATTCCCGATACATAGTACTGAATGTGACTCTGTggacctcactcacaagatagcttCTCACAACagacagtacaggccaaaagtttggacacaccttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274756 True 1554 lncRNA 0.32 2 37061255 37063186

Neighbor

gene id symbol gene type direction distance location
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding upstream 35730 37010695 ~ 37025525 (+)
zc3h7a zc3h7a coding upstream 87403 36951907 ~ 36973852 (+)
trnat-cgu_1 NA coding upstream 183361 36877823 ~ 36877894 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 383333 36651834 ~ 36677922 (+)
zfand2a zfand2a,LOC107568938 coding upstream 480884 36566207 ~ 36580371 (+)
nsmce1 nsmce1 coding downstream 25015 37088201 ~ 37096868 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 944335 38007521 ~ 38058413 (+)
G202405 NA non-coding upstream 1094 37059518 ~ 37060161 (+)
G202400 NA non-coding upstream 23610 37037388 ~ 37037645 (+)
G202394 NA non-coding upstream 28905 37031223 ~ 37032350 (+)
LOC111195542 NA non-coding upstream 146517 36881360 ~ 36914738 (+)
G202341 NA non-coding upstream 388839 36671991 ~ 36672416 (+)
G202483 NA non-coding downstream 71540 37134726 ~ 37134983 (+)
G202486 NA non-coding downstream 90920 37154106 ~ 37154349 (+)
G202490 NA non-coding downstream 164677 37227863 ~ 37228136 (+)
G202492 NA non-coding downstream 169885 37233071 ~ 37295624 (+)
G202509 NA non-coding downstream 262328 37325514 ~ 37325815 (+)
LOC103041887 NA other upstream 67923 36983323 ~ 36993332 (+)
G202336 NA other upstream 120976 36589448 ~ 36940279 (+)
LOC111195488 NA other upstream 1936637 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 3246269 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 3786348 33260173 ~ 33274907 (+)

Expression


Co-expression Network