G63403


Basic Information

Item Value
gene id G63403
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5695445 ~ 5707085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU72215
GGGTGGTGGAGGGGCATTCTTACTTTGTTCCTGTCCGATTGAGTGTTGACGGGGTCTTCGGCAGCCAAGGCGATACTGCTGGCAGTGATCACAAGAAGGATTGACATCTCGAAATAACGAAGATTGACAATGTAGTGGCAGGCCCTACGGACCGGGTTGTTGGGTTTGAAGATGAACATGCTGACAGGTGGAGGGGCTTTGGGCGCATCTGGGGTTTCCTCTTCTTCTTTCTCTGGCTTCGAGGCCTCCATGTCTTTACTATTACCCGTAATGGAGGTCAGCTCCATGGATGGCTGAGTGTCGGTGACCTCTATCATGATGCTGGTGTTCAGGGACGACTTATCCTGATTCAAGGATCCGTGGTTGTTATTATCAGTCTCGCCAGCACCCATAGTGGCCTGTGGGGACTTCTGGAGTGTGCTCTCAGTGAGCTGTAGAGTTGCAGGTTCTGAGTCCTGAGGTGGGTTTTTACAGGGGGAATTGGCTTGTTTTGGCTCTGATGACTCAGAGTTGTCTGGTTTGTTCTGCCTCTGTTCAAGCACTCTGCTCTCTGGACTGATCTCTCCATCATTCTTTGATTCCTTTTCATCTCCCTCATTCCCTGGCCTTTGTTCTCTACTGTCAACACCACCGTCTCCCTGTTGTGTCTCTTTGACCCTGGCATCTGTGTGAGATTCGCGATGGCGTGGGCGTCGGGGTCTGGGCCCCATATCAGGGGTCAGCGTGTCCCCCATCGCAGGTGGCCTGTACTTACGGACTGCCCGCTGCCGCCTGTTCCCATTCAGTCTGGGGCAATGGTTGTTGATGTCTAGAGTGCCCTCGGGTGAGGTCTTTGATTCAGACGACTCTGTTAGGGGTAGATTCAGCGTCACTGGGGGTTCAGGAAGGGATATGTCCGCAGGCATTGGTGGCTCCGGTATCGGAATAGCTAAAGGGGGTTCGGGGATAGAAATGGATAGAGATTGCTCATCTACAGGCATGTCCATAGGCATGGGTGGTTCTAAGGTAGCTTCTGGCAAGGTGGTGGTTGTAGAGGTCTCGATGGCTCTGCGCATGCTATCAGATGGCGATATCCCAGTGGTCCGGTGGTGATGGCAGCCAGGTGGTCCATCGTGCTCTTCACTCGGGCTGTTGAACAGGATCTCACGGCTGGACATCTGCCTGTGGCGGCGCAGTTGGCTGGTCCTCTGCTCCCAAACTGACATGGTCAACCTCCTCCTTCTCTCTCTCTCTGAGGACATGAAAGAGGACATGGGCCCAACCTCCTTGGCTTTCTGCAGGGCATGTTTCTGATTAAACGCCTCTTCCTCCTCCTCTTCATCCTTTGTGAGCTCCTGGGCATTGGCCAAATTGTCAACAGCGATAGCCAAGAAGACGTTGAGTAGTGTATAATTTCCAAACAAAGTCAGAACAATGAAGTAGATAGATGACCACATCCCTGACTTCACTCCTCCTTGAGACCGGATGCCATTGTACATGACTTCATTCCAGTCCTCACCAGTGAGAATTTGAAACACTGTCATGATGGCTGCTGGAAAAGTGTCAAAATTAGTGGGTGTGTAGTCTTCAAAAATGAACCTTCCACCAAAGAGCTGCATGCCCAGAAGTGCAAAGACCACAATGAAGAGGAAAAGCAGGAAGAGCAAACTGATAATGGACTTCATGGAGTTCATCAGAGACACAACCAGGTTCCTCAGCGATGCCCAGTACTTGGTGATCTTGAAAATTCTCAACAACCGCAAGGCACGCAGAACGCTGATCCCAAAGGATGTGCCAGGTCTGAAGAACCCCCAGAGCACCTCAAAAATACTGCCTACTATCACCTGGAAGGAATTCAGGAATTTCACCTCTTCAAAAATGCCAATGATATCCAAAAATACTGTCTAAAGGTGCAGTCACATTAGCAAAATTTCTTCAAAATTTCACAGAAAAAAGGTCCATTGTCTGTTGTCAATAGGGTAGCAATGTTAAACCAAGATGCCTCCTGATTATTCTGTGTGATCAACCTGAACCCGTTG
>TU72217
GGGTGGTGGAGGGGCATTCTTACTTTGTTCCTGTCCGATTGAGTGTTGACGGGGTCTTCGGCAGCCAAGGCGATACTGCTGGCAGTGATCACAAGAAGGATTGACATCTCGAAATAACGAAGATTGACAATGTAGTGGCAGGCCCTACGGACCGGGTTGTTGGGTTTGAAGATGAACATGCTGACAGGTGGAGGGGCTTTGGGCGCATCTGGGGTTTCCTCTTCTTCTTTCTCTGGCTTCGAGGCCTCCATGTCTTTACTATTACCCGTAATGGAGGTCAGCTCCATGGATGGCTGAGTGTCGGTGACCTCTATCATGATGCTGGTGTTCAGGGACGACTTATCCTGATTCAAGGATCCGTGGTTGTTATTATCAGTCTCGCCAGCACCCATAGTGGCCTGTGGGGACTTCTGGAGTGTGCTCTCAGTGAGCTGTAGAGTTGCAGGTTCTGAGTCCTGAGGTGGGTTTTTACAGGGGGAATTGGCTTGTTTTGGCTCTGATGACTCAGAGTTGTCTGGTTTGTTCTGCCTGTCGAAGGGAAGAAGTTAATAGCACAATTTCTTTCTCCAGACTCTCAACAAGGAATACTGTGTACTTGACCATAAAAAATAGTTAGGTATATGTTAAACTAATTTAAGCTGTCACTATGTTGTGATGTGGTCAATTTGTAGGTAAACCTGGAAGGCCAATTTGCTAGTTTCCTCAGGAAGTTCTAATGGGTTTTTGGAAAAGCAGCTTCTGTTTTATGAGTAAAATAAGGTCTGTGGTTAAAATGACTTCCACGTATGTTCTACAACATTGTATAACAATTACATACAATTAATTTCTTTTAAAAAATTGTGCAGACC
>TU72214
AGCACCTGTAAAAGTATTGTATAAAGTAACTTTAAAGTAAAGTTTTAAGAAACTATTATAAAAGATTGTCTCTAATAAGAAGACCACAACACTAAAATATCTGCATATAGTGTACTGAAATGAAGATATTTTATGATATTAATTCTAATAAAAATGTCTAGGAATCTTAAAATTATATCAGTTTATATTTGTGTACTTTCCCTACTGAAAAATCTTGCATTGTGGGTCATGTTTTTGGATGGTGGTGTTTCAAGGATTTTTAAGTAGCTTAATCCGCAAAATTGCCTTGGCCAACCAGCTTCACAAGAAAGACCATGCTAATGGCAATGTCTGTGCTGGTGAACAAACAGCTTGGCTCTGCTCCTCTAGCTAGACCAGCACCAATCCAGCACTAACCAGCAGCAATTAGTCTAAGTTGGTCTTATCAATAGGGTTATCAGAGGTGCAGGGATGCTCAAACCCGTAATGGAGGTCAGCTCCATGGATGGCTGAGTGTCGGTGACCTCTATCATGATGCTGGTGTTCAGGGACGACTTATCCTGATTCAAGGATCCGTGGTTGTTATTATCAGTCTCGCCAGCACCCATAGTGGCCTGTGGGGACTTCTGGAGTGTGCTCTCAGTGAGCTGTAGAGTTGCAGGTTCTGAGTCCTGAGGTGGGTTTTTACAGGGGGAATTGGCTTGTTTTGGCTCTGATGACTCAGAGTTGTCTGGTTTGTTCTGCCTCTGTTCAAGCACTCTGCTCTCTGGACTGATCTCTCCATCATTCTTTGATTCCTTTTCATCTCCCTCATTCCCTGGCCTTTGTTCTCTACTGTCAACACCACCGTCTCCCTGTTGTGTCTCTTTGACCCTGGCATCTGTGTGAGATTCGCGATGGCGTGGGCGTCGGGGTCTGGGCCCCATATCAGGGGTCAGCGTGTCCCCCATCGCAGGTGGCCTGTACTTACGGACTGCCCGCTGCCGCCTGTTCCCATTCAGTCTGGGGCAATGGTTGTTGATGTCTAGAGTGCCCTCGGGTGAGGTCTTTGATTCAGACGACTCTGTTAGGGGTAGATTCAGCGTCACTGGGGGTTCAGGAAGGGATATGTCCGCAGGCATTGGTGGCTCCGGTATCGGAATAGCTAAAGGGGGTTCGGGGATAGAAATGGATAGAGATTGCTCATCTACAGGCATGTCCATAGGCATGGGTGGTTCTAAGGTAGCTTCTGGCAAGGTGGTGGTTGTAGAGGTCTCGATGGCTCTGCGCATGCTATCAGATGGCGATATCCCAGTGGTCCGGTGGTGATGGCAGCCAGGTGGTCCATCGTGCTCTTCACTCGGGCTGTTGAACAGGATCTCACGGCTGGACATCTGCCTGTGGCGGCGCAGTTGGCTGGTCCTCTGCTCCCAAACTGACATGGTCAACCTCCTCCTTCTCTCTCTCCTGGACATGAAAGAGTTAGAGGCATTGAGTGGACGGGCATCAGCCAGATTCTCTGCATCCTCAAAGGAGTAGGCCGCACGGCTCCGGTGAATTGCACGCTTCCTGTACAGGTAGGGCCTCCTCCTCCTCCTGAGGAAAAAAAGAGAGAGGACACTCAATGATACTGGGTGGCAAAAGAAATATTTCAACAACCATGCCACAACAATTGCTTACATTACCTTATCACTCAT
>TU72216
CGCCTTTAAAAGTTGCATCTCAAAGCGCTTCACAGAAACATAAAATACATTGAAAAAAAAAAATAGAAAACATACATTAAAGCAAATTTAAGAGAGAAAGATGCATTAAAAAGAAAAAAAAAATCACTTGTATGCTAGCCTAAAAAAATAAGTTTTAAGTGAAGATTTAAAAACACTAAAAGAGTCAGCATGTCTGATCTCAGTGGGAAGAGCATTCCAGAGTTTGGGAGCAAAAGAAGAAAAAGCCCGGTCACCCGTAGAATGTAAACGCGTTGAAGGAACAATTAAAAATCTGGTCATATACCAGATAGTGTAGTATATATATACTAGATATTGCTGGTGATGGATAGAGAAAGAATAAATCAAGGATACAATTTCCAAACAAAGTCAGAACAATGAAGTAGATAGATGACCACATCCCTGACTTCACTCCTCCTTGAGACCGGATGCCATTGTACATGACTTCATTCCAGTCCTCACCAGTGAGAATTTGAAACACTGTCATGATGGCTGCTGGAAAAGTGTCAAAATTAGTGGGTGTGTAGTCTTCAAAAATGAACCTTCCACCAAAGAGCTGCATGCCCAGAAGTGCAAAGACCACAATGAAGAGGAAAAGCAGGAAGAGCAAACTGATAATGGACTTCATGGAGTTCATCAGAGACACAACCAGGTTCCTCAGCGATGCCCAGTACTTGGTGATCTTGAAAATTCTCAACAACCGCAAGGCACGCAGAACGCTGATCCCAAAGGATGTGCCAGGTCTGAAGAACCCCCAGAGCACCTCAAAAATACTGCCTACTATCACCTGGAAGGAATTCAGGAATTTCACCTCTTCAAAAATGCCAATGATATCCAAAAATACTGTCTAAAGGTGCAGTCACATTAGCAAAATTTCTTCAAAATTTCACAGAAAAAAGGTCCATTGTCTGTTGTCAATAGGGTAGCAATGTTAAACCAAGATGCCTCCTGATTATTCTGTGTGATCAACCTGAACCCGTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU72215 False 2018 TUCP 0.50 10 5695445 5707085
TU72217 False 848 lncRNA 0.45 3 5695445 5698465
TU72214 False 1655 TUCP 0.48 2 5697423 5699465
TU72216 True 1000 TUCP 0.39 4 5704081 5707085

Neighbor

gene id symbol gene type direction distance location
CI01000010_05523602_05535371 BCAR3 coding upstream 159753 5523516 ~ 5535692 (+)
CI01000010_05494740_05504597 NA coding upstream 190184 5493967 ~ 5505261 (+)
CI01000010_05477048_05482911 NA coding upstream 212144 5476525 ~ 5483301 (+)
CI01000010_05414058_05426498 NA coding upstream 268758 5414058 ~ 5426687 (+)
CI01000010_05359191_05385419 NA coding upstream 309761 5359191 ~ 5385684 (+)
CI01000010_05789479_05790006 NA coding downstream 89867 5788332 ~ 5790204 (+)
CI01000010_05819188_05855120 CEP350 coding downstream 120723 5819188 ~ 5855163 (+)
CI01000010_05859214_05887437 NA coding downstream 160749 5859214 ~ 5888267 (+)
CI01000010_05902969_05911426 LHX4 coding downstream 204504 5902969 ~ 5912165 (+)
CI01000010_06014142_06037829 XPR1A coding downstream 315677 6014142 ~ 6038450 (+)
G63399 NA non-coding upstream 1437 5691435 ~ 5694008 (+)
G63390 NA non-coding upstream 36006 5659219 ~ 5659439 (+)
G63386 NA non-coding upstream 49648 5644656 ~ 5645797 (+)
G63384 NA non-coding upstream 52368 5642877 ~ 5643077 (+)
G63332 NA non-coding upstream 57213 5634187 ~ 5638232 (+)
G63405 NA non-coding downstream 17251 5707971 ~ 5717250 (+)
G63442 NA non-coding downstream 182730 5881195 ~ 5881600 (+)
G63443 NA non-coding downstream 184303 5882768 ~ 5883651 (+)
G63333 NA non-coding downstream 389774 6088239 ~ 6089177 (+)
CI01000010_06093805_06101291 NA non-coding downstream 400953 6093805 ~ 6101358 (+)
CI01000010_04640858_04683752 OSBPL9 other upstream 1041452 4640516 ~ 4683778 (+)
G62983 NA other upstream 1246118 4448172 ~ 4449327 (+)
G62856 NA other upstream 1755500 3937757 ~ 3939945 (+)
G62838 NA other upstream 1801652 3890095 ~ 3893793 (+)
CI01000010_03320340_03346243 NA other upstream 2364259 3313695 ~ 3347796 (+)
G63524 NA other downstream 676093 6374558 ~ 6374667 (+)
G63572 NA other downstream 887463 6585928 ~ 6617806 (+)
G65803 NA other downstream 3334082 9032547 ~ 9038005 (+)

Expression


Co-expression Network