G202515


Basic Information

Item Value
gene id G202515
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 37381496 ~ 37434186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274909
gccacatcagctcgtcggctatttcgcggcaggaaaggtactgtctaatcacaaggttctacgatctaagccatcgcaaggcagacagacacagacagacacacagacacattcactcacacctaaggggcaatttcaatcaagttccaattagcctgaacgtgccgtctttggactgtgggaggaaaccggagaacccggaggaaacccacgacACGGGGAggacgtgcaaactccacacagaaagacgcaggtcgccccagccgggaatcgaacccaggccgtcttgctgtgaggcggaagtgctacccaccgcgccaccgtgccgccctc

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU274909 True 333 lncRNA 0.57 2 37381496 37434186

Neighbor

gene id symbol gene type direction distance location
nsmce1 nsmce1 coding upstream 284628 37088201 ~ 37096868 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding upstream 355971 37010695 ~ 37025525 (+)
zc3h7a zc3h7a coding upstream 407644 36951907 ~ 36973852 (+)
trnat-cgu_1 NA coding upstream 503602 36877823 ~ 36877894 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 703574 36651834 ~ 36677922 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 573335 38007521 ~ 38058413 (+)
G202514 NA non-coding upstream 5114 37376161 ~ 37376382 (+)
G202509 NA non-coding upstream 55681 37325514 ~ 37325815 (+)
G202492 NA non-coding upstream 85872 37233071 ~ 37295624 (+)
G202490 NA non-coding upstream 153360 37227863 ~ 37228136 (+)
G202486 NA non-coding upstream 227147 37154106 ~ 37154349 (+)
G202534 NA non-coding downstream 3182 37437368 ~ 37437780 (+)
G202538 NA non-coding downstream 21203 37455389 ~ 37455703 (+)
G202539 NA non-coding downstream 30541 37464727 ~ 37464967 (+)
G202540 NA non-coding downstream 32571 37466757 ~ 37467118 (+)
G202549 NA non-coding downstream 118170 37552356 ~ 37559462 (+)
LOC103041887 NA other upstream 388164 36983323 ~ 36993332 (+)
G202336 NA other upstream 441217 36589448 ~ 36940279 (+)
LOC111195488 NA other upstream 2256878 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 3566510 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 4106589 33260173 ~ 33274907 (+)

Expression


Co-expression Network