G202549


Basic Information

Item Value
gene id G202549
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 37552356 ~ 37559462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU274948
caaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattatggtctaaaaccaggtgtttcagtttcattg

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU274948 True 217 lncRNA 0.44 2 37552356 37559462

Neighbor

gene id symbol gene type direction distance location
nsmce1 nsmce1 coding upstream 455488 37088201 ~ 37096868 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding upstream 526831 37010695 ~ 37025525 (+)
zc3h7a zc3h7a coding upstream 578504 36951907 ~ 36973852 (+)
trnat-cgu_1 NA coding upstream 674462 36877823 ~ 36877894 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 874434 36651834 ~ 36677922 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 448059 38007521 ~ 38058413 (+)
G202540 NA non-coding upstream 85238 37466757 ~ 37467118 (+)
G202539 NA non-coding upstream 87389 37464727 ~ 37464967 (+)
G202538 NA non-coding upstream 96653 37455389 ~ 37455703 (+)
G202534 NA non-coding upstream 114576 37437368 ~ 37437780 (+)
G202515 NA non-coding upstream 118170 37381496 ~ 37434186 (+)
G202556 NA non-coding downstream 51574 37611036 ~ 37655549 (+)
G202590 NA non-coding downstream 234969 37794431 ~ 37798377 (+)
G202601 NA non-coding downstream 241154 37800616 ~ 37856330 (+)
G202607 NA non-coding downstream 291095 37850557 ~ 37854017 (+)
G202619 NA non-coding downstream 302484 37861946 ~ 37862226 (+)
LOC103041887 NA other upstream 559024 36983323 ~ 36993332 (+)
G202336 NA other upstream 612077 36589448 ~ 36940279 (+)
LOC111195488 NA other upstream 2427738 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 3737370 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 4277449 33260173 ~ 33274907 (+)

Expression


Co-expression Network