mylip (mylip,mylipa,LOC107754815,LOC107731572,LOC107694366)


Basic Information

Item Value
gene id mylip
gene name mylip,mylipa,LOC107754815,LOC107731572,LOC107694366
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15400923 ~ 15434466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228520.3
GGAGAGAAGAGAtagaacaggagagagagaaggcaggAGAGCGCAGTGAGAGGGCTCCGGAAAGTGTAAGCGGGATTGATGTAGGGtactgagagagtgagtgagagagagagacagagggaggtcGGTTTATGAGTTTTTATCTACTGCAGGTCCGgtagaagagagagggagaaaaattaaCGCTCCAAAATGCTTTGCCATGTTACACGGCCGGACTCGGTGGtgatggaggtggaggtggacgCGAAGGCGAATGGAGAGGACTGTCTGAATAAGGTATGTAGGCGGCTGGGCATCATAGAGGTGGACTACTTCGGCCTGCAGTTCTCCGGCAGTAAAGGCGAGAACCTCTGGCTGAACCTAAGGAACAGAATCTCTCAGCAGATGGACAATCTGACTCCGTGCAGACTCCGACTGAGGGTCAAGTTCTTTGTGGAACCTCATTTAATACTGCAAGAGCAAACGAGGCACCTGTTCTTCATGCATGTGAAAGAGGATCTGCACCGTGGTCACCTGCGGATGGGCTCGGAACAGGCCGAGGAGCTGAGCGCTCTTCTGGCTCAGGCTGAGTTTGGAGACTACAACCAGAACACAGCCAAGTACTGGTACACCGAACTGTGTGGAAAAGAACCCGACCAGGCCACAGTTAACAGtataATAGCGCGGCACCAGGCTCTGGAGGGTGTTAGTCAGGGTTCAGTGGAGTATCAGGCCCTGCAGCTTGTTTCCTCTCTGGAGCATTATGGGGTGGAGTGGCACTGGGCCCGGGATGCAGAGGGACAGAGACTGGCGATCGGAATCGGACCAGAGGGCATTGCGGTCTGCAGGGAAGACTTCAGTCTGGTCAACAGGATATCCTATCCTATAATACAAATAGCCACTCAGTCAGGGAAGAGCGTATATTTGACGGTCACAAAGGAAACCAGCGACAGCGTGGTCCTTCTCTTTAAGCTAATCAGCAACAGAGCGGCCAGCGGCCTGTACAGAGCAATCACAGAGACGCACGCCTTCTACAGATGCGACACAGTAACGAATGCAGTAATGATGCAGTACAGTCGAGACTTCAAGGGTCACCTGGCCTCGCTGTTCCTCAACGAAAACATCAACCTGGGCAAGAAGTATGTGTTCGACATCCGCCGCACATCAAAGGAGGTGTACGACTACGCGAGACGAGCGCTCTACAACGCCGGCATCGTGGACTTGATGTCCCGCTCTGGGGGTCGATCGCCGTCCTCGCGCTCTCCTTCGCATGGACAGCAGGAGGTGCTAGACTGCAGCGGCTGCCAACAGAGCCGAGCGCTGCAGGAGAAGCTGCAGAAACTGCGGGAGGCGCTGCTGTGCATGCTGTGCTGTGAGGAGGAGATAGATGCAGCTTTCTGTCCCTGCGGACACATGGTCTGCTGTCAGAACTGCGCCAAACAGCTTCAGTCGTGTCCAGTGTGTCGGTCAGAAGTTGAGCACATCCAGCACGTCTACCTGCCCACCTGCACCAGCCTGCTGAACCTGACCATCACAGGCAACGGCAGCCCAGAGCCCATCCACCGGGGCATGgccacacacacctgcactaGCAAAGACTTCTCCAGCAGCGAAAAGCTCTACCAGACCTAAGAAAGCCCAGCGTTCACTCTTCCactaaagcttttattttattacctaCGACTCGGTGCGCATCACGCCCACCACAAAACCTGTTCTTAAACACCAATGAAGAGACCTGCCAACTTTTACTTGTTTTGTATGTTCGATCTTAATTTAATTCTATCAGTTGATCTGATGAAAAGCTGTGTGTACTTTtataatttgaatatttttttttctttctatccaAAATGTTCTCCTGATTCATATCATACAGTGtgcactttcactttcagttgtTTAGTTTTTCTGCTTGtgaacatattttaaaacattttgtgaatgtttttttttcccactttttatttaattgcatttcatgttttttaattgtcaTATTTCCACTCTCAGTATATTATTCTTTTGCTGTGGAACCAAGTGTGCagtatttttcctttttctcttagtttttatttttatccattGAGATCTGAATGGTTTTCAGGCTGATGAAGAGGGACGTGATGGGCACAAACCTGTACAGTGCTGTTCTAGGAATTGAACATGGGATGTGGTCACTCTCTGTTGTCCTATTTTGAGGATATTCAGTGCTGATGGAGCCAAAACTAGACTCCAAACACTGAATGAGCGGCTGGAAAGTAGAGGAAGTTTCTAGTTCTTCTGGTGTTCAGTGGTTTGTTCTGTTTGAAGCTTCTGTACTGTTTCTAACTTCAGCTGCAGCTGACTAGCAGTTTTATATGCAAAGGATACTTGAGGGTCTGTCGGTGCAATGCTAGCTGTTTGACACAAGcttttgagttttattttttgtgggaGACGCGTGaggaaaacgtaaaaaaaaaaaacttattttaaaaaaagaagtctATTCTACACTGTCACTTTACCAAGGTGTTTCCTAAGTGTAGTACTCCTAGGGCTTTGCCTTAATGTAGCAGTAACACAGTGTGTTTGGTATGCATATTCTTTCTTTGCACAGACTATTGTTGAAAGATGAAGAggaattattttctttattgctGACACAATATATGGCACAGTCACTGCAGGGGATATTTTTTCACTATGTACAAGTagatttttgtttctgtttgtttgaaGCAAAAAACTATGCTCTGTACATGTAGGATCTAGTCGATCTTTTATATTTCTTTGGACAAGAGAGGTATTAATAAAGTTgtgatttttaaacaca

Function

symbol description
mylipa Predicted to enable ubiquitin-protein transferase activity. Involved in negative regulation of Wnt signaling pathway. Acts upstream of or within gastrulation. Located in cytoplasm. Is expressed in several structures, including axis; midbrain; neural plate; polster; and retina. Orthologous to human MYLIP (myosin regulatory light chain interacting protein).
mylip Enables cytoskeletal protein binding activity and ubiquitin protein ligase activity. Involved in negative regulation of neuron projection development; nervous system development; and protein ubiquitination. Predicted to be located in cytosol.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MYLIP

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228520.3 True 2800 mRNA 0.47 7 15400923 15434466

Neighbor

gene id symbol gene type direction distance location
jarid2 jarid2 coding upstream 141259 15077544 ~ 15259664 (+)
sdhaf3 sdhaf3 coding upstream 1036246 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 1061521 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 1411985 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 1495885 13902767 ~ 13905038 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 31026 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 157977 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 180707 15615173 ~ 15632584 (+)
LOC103028648 LOC108435516,LOC108273190 coding downstream 199498 15633964 ~ 15645496 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 232172 15666638 ~ 15695499 (+)
G197747 NA non-coding upstream 7245 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 45686 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 609713 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 615183 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 627461 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 387012 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 711045 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 712019 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 754446 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 792101 16226567 ~ 16228218 (+)
G197665 NA other upstream 604195 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 932041 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1107855 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2038265 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2436574 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 327457 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 887476 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 910651 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 954342 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 990151 16424617 ~ 16430534 (+)

Expression


Co-expression Network