LOC103028143 (LOC108273188)


Basic Information

Item Value
gene id LOC103028143
gene name LOC108273188
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15615173 ~ 15632584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228522.3
gtctcttattttttagagctgtgttttatttttttaagcaaatccaaaataaaacactctGAATTTGGGGATGAACCGGAAGTATGGTTTATTGTTGCACCGCCCTGCCGGTGACGCGTCCGGGAGTGGAGTGGCGGGCAGTAAGAAACTACACGACTCTGTGACTGTTTACCTTCTGGACTTATCCACATTAACCAGAAATGCAGCTTTGCGCCGGGGTCCTGTGTGGTCTAAGAAGTGAATTTGGGTGGAGAGAGTGTTAGCTAGTGTTTCATATCCCATGAGGAGTTTACAGGCTGGTTAGAGCTGGGTAGCTTTAGCGACAAGCTaactttcagtgttttgttttggaGACTGGAACAactaagctaggctagctagctagttaactctAGTTAAGCGAGCTACATAGGTTGTCTAGTCAGCTAACAGTCAGTAAGgttgtgttaaaaaacaaacagatattAAATGTGAATAGCCTTTCTTACTCCTAGAATGTGAAGTTGGAGGaggttgtatatatattttatttaaagggaAGTAGATAGCTTAGCCTAGCTATGTGTAAACGTCCTGTCATGTATTTGAAACCTCCGCGGGATCCAAGATGAATCCAGGCAGAAAGCGCAGACTGCAGCAAACTTCCAGAGCTGCAGGCTCTCGCTCCAAGTGCAGCAAGAATGAAGAGAGCAAATGtaaaccagcagcagcatcatcatcttcctCCCAGTCCCTCTGTCCTGATGAAGGACTCGCCTCCTCTCAGTCTCCAGAGGAAGCAGCGATACATCATGAAAACACAGCGGCAGCAAGACATGGAGAAAAAAGCACAACATGCAACCAGGAACTCTGTCCAGGTTTTGTAAACGAAGGTATAATGCAGAGTGCAAAGCTTGTCCTGTCATCAGAAGATGAAACTGAGAAGACCCTGGTCATCACAGTTGATCATGGACAAAGCAGCACACGGTCAAGTGGACGAAGAAAAGGATGTCTAAAGAGGAAACGAGAGATGAGTGGGACTGCTGAAGCAGGGGGCCAgcaagaggaagatgaggaggatgaAATACAGCCAGAGGTTGAGATTGATCAAGAGCTTGACAGGGAGTTGGAGAACAAATCACGGCAGCATAACCTAACTTCAGCCAACGTGCGCAATATTATACATGAGGTGATTACCAATGAGCACGTTGTGGCCATGATGAAGGCTGCCATCAATGACACTGAACCTGTTCCGTTGTTTGAGCCCAAGATGACACGTTCTAAACTAAAGGAAGTTGTGGAGAAAGGAGTGGTAATTCCAACCTGGAACATTTCACCTATTAAGAAGCCCAGCAAaatgaagGGTCCTCAGTTTGTGGACATCCCTTTAGAGGAGGAAGACTCGTCTGATGAAGAGTACCATCCtgatgaagaagaagatgatgagACAGCAGAAGATACACTACTGGAAAGCGATTTGGAGAGTACTGCTTCATCACCTCGAGGCACTCGTAAAAGCCTCAGCAGATCCCTCAGTGAATATGATGGAGAAAACAGCTGCAGCCCCAGACAGAGTTTGCACAGGGCAAGGCATCTGAGGGTGGAGGTTGTGCCCATGGGTCCTCCACCACCCCCTCAGGGCCCCGAGCCTCCAGGGCCTCCAAAAGAGTGTAGCTTTATGGAGAAGCTTTATGCTGTAGATGAAGAGCTGGCCATTGGATCTGACTCTATAGACACATACCAGTCTCTTAGCAGCAATGGAGAAGACAGTCTTATGGCTTTTCGCACTCGTTCTAAACGTCCACTACGAGATGTGCCTTTGGGTCGCCTAGAGGCGGAGCTCCGAGCCCCTGACATCACGCCGGACATGTATGAGCCTGGCTCTGCCACAGAGGACAGAGAGTGGACACAGTGGCTGCAGGGCCTCATGTGTTCTGATGTGGAGAACGAAGAGGaggctgatgatgatgatgatccgGAGTATAACTTTCTGGCTGACCTTGATGAGCCAGATGTGGAGGATTACAGAAATGACAAGGCAGTGCGCATCCCCAaGAAGGAAGTGAATGATTTGATGGAAGAGCTGTTTGATGCATTTCAGGATGAGCTGGGGGGACAGGATGAAGAAGGTCATGAGGACGAagatgaaaaagaagaagatgacACTACTCAGCAGGAACCTTCCAGTATTCTGGAAACACTTGAATATGAGGACCCTTTGGCAGATATCCGGAAACAGCGCTTTCgaacagtgaaagagcagcTGGCTGCTATTCGCAAGCGCAAGGCTTTTTTGGAGAGTAAAGGTGTATTTATACCACCTCCAGCCCCTAAATGTCCCACAAGCCCCTCTGGCCCCATGCTCCTGACCCACTCCCAGAAACTCCACCTTCAGCAGCACATTCAGCAGCACGTGCAGCTGCTGACTCAGATAAACATGCTGAGTACATCCGTAAAACCCCTACAGACGGAGGCCTGCACAGCTAGACAGTTTCTGTTAGAGCTGCAGTTCTTTGCCCAGCAAGGAGAGCAGGCCCGGAGTGAGGTGGAGCCTGGTTTTGTCAGTATTTTCAGAGCCTGTAACCTACAGGCTGCTATCTCCCTGCTTGAGGAGTTAGACAATTCTCCTAAAACTGACCCACAGCCTCATGGGCCGCTGTTTCCAGGGACTCAGATTCCTGCTCATTTGGCATGGTTGATGGCCACGCGTCCTGTTTTTCTCTACCCTGAGCTGCTACCGAGAGTTGACCTGTCAACTTTTCATTACAAGGGACCATTTACATCAGCAGAGAACTGTTTGGTGGTTTTGGGCCATAAGCACTTCCAGGGCACTTTACACCCACTTCAGCTGGCATGTCAGTACCTGCTTGTGGCCAGGAAACTTGTATGCTTGACATCCCACATgcgattttttttccaaaaagaaAGCCCTAGCATTTTAAAGAATTACTTTCTAGATGGTGTATATCCCTCCATGCCCTTGGCCTGTGAGAGAGTCAGCCCTGGTGACATGTGTCCTCcagtggagagagaaagacgccTGATGCCATATTGGCTTTCGGAAAACCTTCAGCTTATTAAAGATGAAGTGAGAAAATTCAACCCACAGCTTCACAGTTCTCAGCCTGCCCAGCCTGAAGACACTACTCTAGCTCCTTCTACTATTTCTGCCATTTCAGAGCCTGCCTCTCCATCCTGTGCTTTTATCTCTAATACACAGTACCCCCCCTGGCTACCAGAGACTCTTGCTGAGTCTCTAAAGCCACGTCCTCCTGGTTCCAGAAGAAAAAAGAACTCTGATCTTTCTGCACAAGCAGTAACTGAACCTTCCAAACCTTCTCCACCTCCAAAAGAAGTAGTGGAAGCTCTTAGTCGCCTCCCTCTCATTGCGCCGAAAAATCCTTGTTCTtctgtaaatacatttatttatcctGCCAATCAAGCGAATCCCCCttgtaataaaaaatctaaGACGAACCCCCCCTCATCTAGGACTGTAACCAGGAAAAGAAATGGAGAAATCCAAACAGAACCCACAAAGCTCACAAATCCAACAGATTCTAACCAAGAAAAGCTTATTATGACTTTACCTACCGCTGCTGTGAACTCTTCTTCTGTAGATGAAACATGCCTTATTGCTCCAGCAGGCTCAGGGGAAGGGTTAGTTACCTCCTTGCCTGCTGCTTCATTAGCTACCAGCCTGAACCTACCTTCTCTAGGGGATGTAGCTGTGAAAACCACAGAAATTCACAGTGCAGGTTCTAGCACTGCAGAACTAACACTACCCGGACCTAACCAAGCAAATGTTATTATCTTGCCTGCTACTTCAGCAGCCACTGCCTTCATTTGTCCTACACCCATCAATAAGCTAATGACCCAAACACCTGTATCTTTCACCCAGTTGGCTAAAGACCACATTAGTCAACGTTGTGGTACTCTGCTCAGGCTAAGTACAGGACCAAGAATTCCTCTGGGTATGAATCCTCCAAAGCCACTCTCTTTGCCTCAGAATACTCTGCATCAGTTTCTTATACTGCCTCCAGGCTGTATTGTCACAAACAGTGCTAACCTGAATCTAAAACCTGTTACAGCTCACGACCAGACACCCCCATTAACTCAAGACTCAATGACCATGGAAAGCGTTACTCAGAGTTCTTTGGGGAACATTTCTGAGGGCATGCAGGATTTTAATGCAGATTTACAGAACTCCAAAtcaaataaagctctggaaggCAGCAGTGCATTAAATAAAGTGATAGAGGAAGAAGAATTGGACGAAGTTGAGATGCTTGGTAATGAGGGAGAGCCTGAGGAGTATGAAGAGGAAGATTTTAGAAAACCCTTCCTTACCTTGTCAGAATCCTCAGGAAGCCCAACACCTAGTTTGTCTGGGGACGATGTTGCCATGGTGACTGTGATGGCTGAGGATGAAAGGGAACAGAGGCAACCTGGCACTGAAGGTGAGAGAGGTGTAGAAGTcttggagagaaaaacagaagggGAACATTCTGGGAAAGTGACGTCACCTGCTTCTGAGACCTCTGTGTTATCTCTGCCAGAGCTTAAGGAGACAATAGAGAAATTATCAAGGCTGGCATCAGAACCCAGCTCTGAAGATAAAGGACTCTCAGAAGAACTCCAATCAGAAGAAGCACTTCTCTATGATGATTTCTCTGATGATGATCCTCAGAAGGATAGTAAAGATGTTGCTTTTGCTCAGGCCTACCTGGAAAAGGCATGCGAGGTGCTGCAAGTGGTGCCAGGAAAGGTGGAGGAGTTCCTGGGGGTGCTGTATGAGTTTGAGAGGGACCCTGAAGGCAGGACATCGGTGGAACTCTTTAAGAGGCTGAAGCCAGTGCTAAAAGATTGGCCTGAACTTCTCAGTGACTTTGCAGCTTTTCTGCATCCTGAACAAGCTAATGAGTGTGGCCTGCTGTCAGAACAGCAAGCATTTGAGCGGAGCAGACGGTTCCTGAGACAGCTGGAGCTCACTTTCGGAGAACACTCTGTGCATTACAGGCGGGTTGTACGCACTTTGCAGCAAGGACCTTCTAAAAGCCTAAGTGGTTTAAAGGAGATGAAAACCCAGTTAGCCATGCTGTTCCGTGACCATCCCCACTTGTTGGAGGAGTACTGGGTGTTTTTTGAACGGCTCCACTCAACTGTGCAGTGTCGGTCTGACGATGCAGAGGAAGTCGAAGAGGAAGACCTGGATTGTGATGACTCTGACAGTGTTTGTAGTGTTCAGACAGTGCACAGTGTGGAGGCAGAGCAGGAGGATCAACTCTTCAGAGCACTTAATTCTGAAGAGAAAACAGACAATCACACAAGTCAAACCCACAACAAAAATAAAGCTGACATAGTAACCCAGGATGCAGAGTACCATGTTGCTGGTCCAGAGGTGGAGGATGAAAATAGTAAGGAGAGAGATACGCAGTTCTGCCTTCAAATTCCAAAAAGTCCTGTCTGTGCCAAAAACTCTTCACGTATGCCAAGCGGGGAAAAGGTTGTGCTTTGGACAAGGGAGGCAGATCGCGTGATACTTACCACCTGTCAGCAGAGAGGAGCCAGTCAAAGTACCTTCAgttctattgctgctcagcTTGGAAATAAAACAGCCACTGAGGTTGGTGCGCGCTATTTGGACCTCATTAATTTGTTCCACAGATCCACAAAGCAGATTCAGACCTGCCTGTTAGACACGGAGGTCCAGTCCCGCCCTAGAGAAGAGGAACCAGATTGAGAAAAATCCATAATAAAGCCAAGTTCATGTGTGATAAAGTTCTCTCAAAACAAATGAACTGACAAACCAGAAGTTGCCAGTAATGGAGAACATCAGCAACTGTTTGAACCCCCCCACAGTGGTTGCTTTGAGAACATGACTAGGTTCGGTTGGAAAATGGAAAGAGGGCAATACCTCATATTAAATGCATTTGGATGGTTTATGAGTCTGGAGAACTGTCAGTAAGGCCACCTGAAGGATTTAAGACATCACAAAGCAGCctaatatttttattgctaGTGTTTGTTGAGATAATCTGCTGCAGGCTTAAATTATGTAGCAAGGAGTCAGCTGGTCTgatgaaaaagaaaacactgagagcAATGCAGGCTGGAGCTTAAAAGAAACTCCCCGAACACTCTTGAGCATTTTACCAGAAGTTACTGagcaaaaaaacaactttaagtGGTGAATGTTTGTATTTCACGACTGCATGTATGACCTTCAGATAACTAATTTGTGAATTCTGTTACTGGTTCACTTAGTGTTTTACATCTTTGGCCATTGATCATAAATCCATgaatgtgttaaaaacaaaaagacagaaTATAAATGTCATAATATAAGAGGAAGTGGTGCCTTATTCAATTTCATATTGATTGCAGCATCATAAAAAGAGAACATCtctcacagaaacactgaaaaccttcttgtataatatattgtacaGAAACACTAAAGATTGCTGCAAAATACGTTTGCAttttatctgtgtttatttgGTACTCTTGTAAGTGACGATTTGTAAGAACATctgacaaataaaatgttttaaaaaaattatcctTA

Function

NR:

description
PREDICTED: GON-4-like protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228522.3 True 6550 mRNA 0.46 28 15615173 15632584

Neighbor

gene id symbol gene type direction distance location
ints3 ints3,LOC107754816 coding upstream 3986 15592443 ~ 15611187 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding upstream 32315 15465492 ~ 15582858 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding upstream 180707 15400923 ~ 15434466 (+)
jarid2 jarid2 coding upstream 355509 15077544 ~ 15259664 (+)
sdhaf3 sdhaf3 coding upstream 1250496 14350057 ~ 14364677 (+)
LOC103028648 LOC108435516,LOC108273190 coding downstream 1380 15633964 ~ 15645496 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding downstream 34054 15666638 ~ 15695499 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding downstream 67141 15699725 ~ 15709451 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding downstream 103953 15736537 ~ 15747045 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding downstream 115966 15748550 ~ 15752940 (+)
G197747 NA non-coding upstream 221495 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 259936 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 823963 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 829433 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 841711 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 188894 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 512927 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 513901 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 556328 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 593983 16226567 ~ 16228218 (+)
G197665 NA other upstream 818445 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1146291 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1322105 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2252515 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2650824 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 129339 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 689358 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 712533 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 756224 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 792033 16424617 ~ 16430534 (+)

Expression


Co-expression Network