prrt1 (prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307)


Basic Information

Item Value
gene id prrt1
gene name prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15699725 ~ 15709451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228526.3
CCCGTCTTGCTGTGAGAGCCTGCTTTATGAATTATTCCCAGCGGTTGGTTTCAGATGCCATTATACTATTCCACACAGATGGCTCTGTCTCTTTAAGACAACCACACCGTGCGGCTGATAAATTCAGTGTAACGCGAGGCGTTGAGGGAAACCTGTTTTCAGCTGGTAGAGGTGGATGTGCTGCTGTGGTGCTGAAttggagaaataaagaaaagaaagcagcGCGAGACACAGGGATTTACAGCAGCAGAAGCGGGATAGACTGAGATGATCCATCTGAAGATGCTCTCCTAGCTAAGAGCTGCTGTCACCACTGCCCAGTTTTAAGGCTTTAAATCGACACAAAGGCAGGCAGACGTGTCGGCTGATTTTCCTCCTCACAGCGGATTGTGGAGGGACAGCGGAGAGGCATCGCAGAACGGATCGGGATGTCTTCGGAAAAACACGCTCTAGAGGAGGCGGCTGGCAGGCAGGCCATGTCGCAGCAGATGAACCAAATGGCTCCTCCGCCCTACCTGCCCTCACAGGACCCAAACATGCCTCCACATCCTCCCCCAACTGGCTGTGCCCCCCAACCTAATTACCCGCCGCCTCCTCCGCCTCCAGGCTCAGAGGGATACCTGCAAGAGACCCAGTTTCACTGCGGGACGCTTGGGCCTCAGGGGGCTCCAAACGGCTACACAATACAAACACACGGACCTGGGAGTACTGTTCCCCATCCTCCAGTGGGCTACTTGCACCCGGGATACCCTCTACAGCTGCAGCCCTGCACAGCCTACGTCCCAGTCTATCCTATTGGAACAGGGGGTCAGCCTTATCTGCCTAATGGCGCACCACATCCAGGTGTGGCCCCGGGACAGATGGCCATGCAGATGCCCCCCGGCATTGCTCTGATGGAACCGCGCCGCCCACCTCACGATTATCTGCCCATAGCTGTCTTGACCACTGTCTGCTGCTTCTGGCCAACTGGCATCATCGCAATCATCAAAGCCGTGCAGGTCCGTACTGCCATTGCCCGTGGCGACATGGTGACAGCGGAAATAGCATCCCGTGAGGCGCGCAACTTTTCCTTCATCAGTCTGGCAGTGGGCATCGCTTCTATCGTCCTCTGCACCATACTCACCGTTGTTGTCATCATCGCCTCTCAAcaccatgatgatgactgggaGCCCTAAAACCCAAGGGGTCCCACTGGACCATCCACCTGCTGATTGCAACACAGACTCCTGGCTACTGTACACATACGGTACTGCCAGTATTCTGCTCATAGCATTCCGATACAAAGCACTGACCCACCGGCACAGACACCCACACCCTAAATCCCTCACTACTGGAATCCAGGCTTAAACCACTGATCTGCCATATTTTAGTCTCCAGGTATAGCTCATCTCCACAGGCACTCCCAGACAGGGGCCAAAGTAGGGAAAACAGCATTGACTATACATGTGCATGAGCACACATGAACAAGAGACACGTTTtccttgtgttaaaaaaaaaaa

Function

symbol description
prrt1 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PRRT1 (proline rich transmembrane protein 1).

NR:

description
PREDICTED: proline-rich transmembrane protein 1-like

GO:

id name namespace
GO:0009607 response to biotic stimulus biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23896 PRRT1; proline-rich transmembrane protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228526.3 True 1499 mRNA 0.54 4 15699725 15709451

Neighbor

gene id symbol gene type direction distance location
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 4226 15666638 ~ 15695499 (+)
LOC103028648 LOC108435516,LOC108273190 coding upstream 54229 15633964 ~ 15645496 (+)
LOC103028143 LOC108273188 coding upstream 67141 15615173 ~ 15632584 (+)
ints3 ints3,LOC107754816 coding upstream 88538 15592443 ~ 15611187 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding upstream 116867 15465492 ~ 15582858 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding downstream 27086 15736537 ~ 15747045 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding downstream 39099 15748550 ~ 15752940 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding downstream 83318 15792769 ~ 15800233 (+)
LOC103032568 NA coding downstream 147665 15857116 ~ 15859664 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding downstream 520056 16229507 ~ 16254632 (+)
G197747 NA non-coding upstream 306047 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 344488 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 908515 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 913985 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 926263 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 112027 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 436060 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 437034 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 479461 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 517116 16226567 ~ 16228218 (+)
G197665 NA other upstream 902997 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1230843 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1406657 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2337067 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2735376 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 52472 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 612491 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 635666 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 679357 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 715166 16424617 ~ 16430534 (+)

Expression


Co-expression Network