csnk2b (csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962)


Basic Information

Item Value
gene id csnk2b
gene name csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15792769 ~ 15800233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228536.3
GCCTGGTTCGTCATGACGTTGCTAAAGACGAAACACGCCAATCAGCGCTCCGCTTCTGCAGCAGCTTTTAGCCTGAATCCGGGAGTTTCCCCAAAATGAGCAGTTCGGAGGAAGTTTCGTGGATTTCTTGGTTTTGTGGTCTACGAGGAAACGAGTTCTTCTGTGAGGTGGATGAGGACTATATCCAGGATAAGTTTAACCTCACTGGACTCAATGAGCAGGTTCCACATTACAGACAAGCTCTGGACATGATTTTGGATCTGGAACCTGATGAGGAACTGGAAGACAACCCAAACCAGAGTGACCTGATAGAGCAGGCTGCTGAGATGCTCTATGGCCTGATTCATGCACGATACATTCTTACTAATCGTGGCATTGCGCAGATGttGGAGAAATACCAGCAGGGAGACTTTGGCTATTGCCCTCGTGTTTACTGTGAGAACCAGCCAATGTTGCCCATTGGTTTGTCCGATATCCCTGGAGAAGCTATGGTCAAACTCTACTGTCCTAAATGTATGGATGTGTACACACCGAAGTCATCTAGGCACCACCACACTGATGGGGCCTACTTTGGAACAGGCTTTCCCCATATGCTCTTCATGGTTCACCCTGAATACCGGCCAAAGAGGCCTGCAAACCAGTTTGTGCCCAGgCTCTATGGCTTCAAGATCCACCCTATGGCATACCAGCTACAGCTGCAGGCAGCCTCTAGCTTCAAGAGCCCTGTCAAGGCCATCCGCTAATAAtcagaaaggaggaggaggcgggaGGGAAAGTTGAAGAGGCAGGAGGAGAGGGGAAGATCTGTGTCTCACTTAGTCTCATTCTCCTCCCAGAGACCATTTGTTTTAGATTAGTTTTGATTGCGAGAAATGTTCAAATATTGAGAGAGTGGGAATATAACATGCACACTTCAGAAATCTTATAAACAACCTTTCCTCTAGACCACACGTACACAGCATGGGGATGCCGTGCAGCCATTGTTGTTTACCTTGTGTAAATTGTCCCTTCTCGAACTTTAAAAGATGAAGCTCTAATTCAGGACAGTTAAATCTTGTAACATggctttatttactttacttgTGTCAAGagaaaatcatgtttattttggtcagagGTGATGTACAGTAAAAGTTAAAACAGTAGTGTCTcagtgccccccccccccccatttccCCCCCACACCTCATTTAGTGACTATGGCAGATAGAGACTGTTGCAGGGAGAAAGAGCAGTTAGAAAAATACAAGTCACAGTTGGTTCTTATTGCTATTGAGTCCTACTATTGGCTTAattcacatctttttttttccaattgccTTAAAGTCATGACAATTTCAGACGAGCTGTAGTTTGATTAACTTGGATGTTACTTTGCTAATACTTGTTGAGTGTTGACCAAATGTTCATCTGAACTTACATGTATTAGTTGAAATTACTAGGAACTGAAAGCAAACAGTCTGTCTCCATCAGTCCAGAATGAGTTTCTTTTAAGTCCTCAGTATTGCGGAGATGTTCCCCTCAGAAGTACTTGTACATTGATTCCTGCCACAGTTTTCGTATGATTATTTATGTGAGACTTTTCCATCGTAAATCATCCTTAGTTTTGAAattctgttttagttttttcccAATCCTCTCAACTATCTCCAATTTCATTGAAAGGCATGTGACTGCAGGATATAGATCAATTGGATGCATTGGTAAAGATTGTAATTATTGCTACTGTttctggtttgtgttttttgttcttaatttttCCTTTACAGCTGTTGAGGAACCAGGGTTCAGAATTCacaataaacttttcttttccTATAA
>XM_022683107.1
ttttgttttaccTTCTTTTGTCTAGTTTCCCCAAAATGAGCAGTTCGGAGGAAGTTTCGTGGATTTCTTGGTTTTGTGGTCTACGAGGAAACGAGTTCTTCTGTGAGGTGGATGAGGACTATATCCAGGATAAGTTTAACCTCACTGGACTCAATGAGCAGGTTCCACATTACAGACAAGCTCTGGACATGATTTTGGATCTGGAACCTGATGAGGAACTGGAAGACAACCCAAACCAGAGTGACCTGATAGAGCAGGCTGCTGAGATGCTCTATGGCCTGATTCATGCACGATACATTCTTACTAATCGTGGCATTGCGCAGATGttGGAGAAATACCAGCAGGGAGACTTTGGCTATTGCCCTCGTGTTTACTGTGAGAACCAGCCAATGTTGCCCATTGGTTTGTCCGATATCCCTGGAGAAGCTATGGTCAAACTCTACTGTCCTAAATGTATGGATGTGTACACACCGAAGTCATCTAGGCACCACCACACTGATGGGGCCTACTTTGGAACAGGCTTTCCCCATATGCTCTTCATGGTTCACCCTGAATACCGGCCAAAGAGGCCTGCAAACCAGTTTGTGCCCAGgCTCTATGGCTTCAAGATCCACCCTATGGCATACCAGCTACAGCTGCAGGCAGCCTCTAGCTTCAAGAGCCCTGTCAAGGCCATCCGCTAATAAtcagaaaggaggaggaggcgggaGGGAAAGTTGAAGAGGCAGGAGGAGAGGGGAAGATCTGTGTCTCACTTAGTCTCATTCTCCTCCCAGAGACCATTTGTTTTAGATTAGTTTTGATTGCGAGAAATGTTCAAATATTGAGAGAGTGGGAATATAACATGCACACTTCAGAAATCTTATAAACAACCTTTCCTCTAGACCACACGTACACAGCATGGGGATGCCGTGCAGCCATTGTTGTTTACCTTGTGTAAATTGTCCCTTCTCGAACTTTAAAAGATGAAGCTCTAATTCAGGACAGTTAAATCTTGTAACATggctttatttactttacttgTGTCAAGagaaaatcatgtttattttggtcagagGTGATGTACAGTAAAAGTTAAAACAGTAGTGTCTcagtgccccccccccccccatttccCCCCCACACCTCATTTAGTGACTATGGCAGATAGAGACTGTTGCAGGGAGAAAGAGCAGTTAGAAAAATACAAGTCACAGTTGGTTCTTATTGCTATTGAGTCCTACTATTGGCTTAattcacatctttttttttccaattgccTTAAAGTCATGACAATTTCAGACGAGCTGTAGTTTGATTAACTTGGATGTTACTTTGCTAATACTTGTTGAGTGTTGACCAAATGTTCATCTGAACTTACATGTATTAGTTGAAATTACTAGGAACTGAAAGCAAACAGTCTGTCTCCATCAGTCCAGAATGAGTTTCTTTTAAGTCCTCAGTATTGCGGAGATGTTCCCCTCAGAAGTACTTGTACATTGATTCCTGCCACAGTTTTCGTATGATTATTTATGTGAGACTTTTCCATCGTAAATCATCCTTAGTTTTGAAattctgttttagttttttcccAATCCTCTCAACTATCTCCAATTTCATTGAAAGGCATGTGACTGCAGGATATAGATCAATTGGATGCATTGGTAAAGATTGTAATTATTGCTACTGTttctggtttgtgttttttgttcttaatttttCCTTTACAGCTGTTGAGGAACCAGGGTTCAGAATTCacaataaacttttcttttccTATAA

Function

symbol description
csnk2b Predicted to enable protein kinase regulator activity. Predicted to be involved in regulation of protein serine/threonine phosphatase activity. Predicted to act upstream of or within Wnt signaling pathway and phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytoplasm. Orthologous to human CSNK2B (casein kinase 2 beta).

NR:

description
PREDICTED: casein kinase II subunit beta isoform X1

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005956 protein kinase CK2 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019887 protein kinase regulator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03115 CSNK2B; casein kinase II subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228536.3 True 1821 mRNA 0.43 7 15792769 15800233
XM_022683107.1 False 1761 mRNA 0.42 6 15795968 15800233

Neighbor

gene id symbol gene type direction distance location
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 39829 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 45724 15736537 ~ 15747045 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding upstream 83318 15699725 ~ 15709451 (+)
skiv2l skiv2l,LOC107754802,LOC107677455,LOC107711323,LOC107694354 coding upstream 97270 15666638 ~ 15695499 (+)
LOC103028648 LOC108435516,LOC108273190 coding upstream 147273 15633964 ~ 15645496 (+)
LOC103032568 NA coding downstream 56883 15857116 ~ 15859664 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding downstream 429274 16229507 ~ 16254632 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 799054 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 895363 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 1494658 17294891 ~ 17829877 (+)
G197747 NA non-coding upstream 399091 15388554 ~ 15393678 (+)
G197716 NA non-coding upstream 437532 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 1001559 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 1007029 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 1019307 14771795 ~ 14773462 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 21245 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 345278 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 346252 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 388679 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 426334 16226567 ~ 16228218 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 2915 15761923 ~ 15789854 (+)
G197665 NA other upstream 996041 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1323887 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1499701 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2430111 13324386 ~ 13362658 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 521709 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 544884 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 588575 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 624384 16424617 ~ 16430534 (+)
G198344 NA other downstream 2584394 18384627 ~ 18385072 (+)

Expression


Co-expression Network