LOC103046991 (celf3a,LOC108437918,LOC107750801,LOC108272714)


Basic Information

Item Value
gene id LOC103046991
gene name celf3a,LOC108437918,LOC107750801,LOC108272714
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9603327 ~ 9638916 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230566.3
GGGGGGAGACACCGGCTTACGACGTCAAAGCACTGGGGTACCTACACGGAGAGAGTGTCCAGACCGCTCATATAGCCCGAGACCAGCTGGACgagcattttccttttttttcctcttcctgTCAGTGGAGGCGCGTTAGAAAGCCGGCGGTCGACATTATAGCAGGAGCGCTCTGTTCAGGGGTAAACAGCGTGAAAGACACGACCGAGCGAGACGCAGCTAAAGgacaccatctctctctctcttatacacacagatacacactgcCTTCACACTCGCTCAGCGTCTCAGCGTCTCCACTgagctcttttattatatcagcATCGCCAGCGGAAAGGACGAACCACAccgacacacagagagagagggagagaggctACGAGAAAACAAGCCAGCATCCACCCCCTCAGGATtaacaaggagagagagacaaacagagggagagagagaccgagaAGAGCAGCAGAGATTCACCATTTGTCATCTTCAAGGAGCCGGGATCATCTGAGGGAAGCCCCTCTTCCGGAGACAGTCTCCCCCTCCGCCTCTGACCGGCCGCCGCGGGCGCCGCGAGTCCGTCCAAATGAAGGAGCCCGACGCCATCAAGCTCTTCATCGGCCAGATCCCCAGGAACCTGGAGGAGAAGGACCTGAAGCCCATTTTCGAGCAGTTCGGCAAGATCTACGAACTGACAGTCATCAAGGACAAGTACACGGGCATGCACAAAGGATGCGCGTTCCTTACATACTGTGCCAGAGAGTCTGCCTTGAAGGCCCAGAATGCATTGCATGAGCAGAAAACATTGCCAGGGATGAACCGGCCCATTCAGGTGAAGCCAGCTGACAGCGAGGGCCGAGGAGACAGGAAGCTGTTTGTGGGCATGCTGGGGAAGCAGCAGTCGGATGCTGATGTGAGGAAGATGTTCGAGCCGTTCGGCAGTATAGAGGAGTGCACTGTGCTCCGAGGGCCAGACGGAGTCAGCAAAGGTTGTGCATTTGTGAAATATCAGAGCAACGCAGAGGCTCAGGCAGCCATCAGCGCTCTACACGGAAGCCGTACTTTACCGGGGGCCTCTTCCAGCCTGGTGGTGAAGTTTGCAGacacagagaaggagagaggcaTCAGGCGCATGCAGCAAGTCGCGTCTCAGCTGGGCGTCATCAGCCCAATGAGCCTTCATTTGGGGGCCTACAATGCTTACACACAAGCACTTGTCCAGCAGCAGGCTTTGGTGGCTCAGTCCGCATACCTGTCTCCCGTAGCAACTGTTGCGGCAGTACAGATGCAGCAGCTGGCTGCACTCAATCCCAACAGCATCATAGCCACACCCATTGCATCAATCACTCCTTCCTCAGGTACGAGCACCCCTCCAGCCATTGCTGCCACACCAGTGCCTGCTCTGCCTCCACAAATTGCAGTCAACAGTTACCCACCCGTGCCTGCCCCACCTAGTGGGCAATCAGCCTCTGAAGCACTGTACACCAATGGAGTCCACCCATATCAAGCTCAGAGTCCTGCCTTGGACCCTCTCCAGCAGGCATACACTGGCATGCAGCATTACACCGCAACATATCCTGCTGCTTACGGATTGGTGGGTCAGCCATTCCCACATCAGCACACCCTGGTTGCTCAGCAACCCCAGCAGccacagcagctgcagcagcgaGAAGGTCCAGAAGGCTGTAATATCTTCATCTATCACCTGCCTCAGGAGTTCACCGACTCTGAGATGCTGCAGATGTTTCTCCCTTTCGGCAATGTCATCTCAGCCAAGGTTTTTGTTGACCGTGCCACAAATCAGAGCAAATGCTTTGGTTTTGTGAGCTTTGACAACCCAGCCAGCGCTCAGACTGCCATCCAGGCCATGAATGGCTTTCAAATTGGCATGAAAAGACTAAAAGTGCAGCTGAAGAGGCCGAAAGATGCCAACCGTCCATACTGAGATGACCAGgtcAAACAAACGACAAAAAAGAGGACTGAAGAAGTTGGTTTGGAGAGAGTTtaacggaaaaaaaaaacgcaaacaaaaaactttttttttctcagctacAAATTATGGGACCAACTGCTCATTTGAAAGACcagatagaaaagaaaaaaagaaatcacaaCAAATATATACGTTTAACAGATGAACCTAACCTGCAGCACATGGctcaggtgtaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaatctaCATTTACAACCTCATCAGTATACAATATATGACTGAACTATTTGTAGGCACATTCTGTACAGCTAGTCACTGGCTAAAACACTATCGATGCAATGTCACAGACTTGCACATTCTTTCATGCGCACTATTttcaaaagtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgttttgAGCGGTTCCAAGGTGCCGTCTCTTTGTGAACAGACACAGCAACACTCTGCACATAAAATGGGACCAACACAAACACGTCACGTCCGTGCAAGACCTGAGAGCCGGCTTAAGCTCACACTGGACTACTGCAGTCTGGACTGTTGAGCGCCGGTTACGTGTATATAGAAATTTATTCGGGCCATGAGAAGGCATATCAGTCAggggggagggagagaaagagggtgggAAATGGGTGGgttatttatgtttatgatttatttatgcTCATCAGTGCAAAGCATTAAGGGGACGTTAGCTAGAGAAAGAGAATCTTTTGGGTGTTGCGAGTAGAAATCACCTGCAGGCTGAGCTCAGTAGCAACGGAACACAGAAGACAAGGAACATCTGGGAGTTCTGGAAGATCAGGAAGGAGGAAAGAAAAACGGGAAAATTTGGGCCATGGGTGGGAGGCGGTTTAAGAAAATGAATATTGTCCATGACAGTAAGGCCGTAGTTAGATTTTACATTTCTGAATATGTTTAGGAGGATTTTTTCTCATGAGAAAATAGAGTggaaagcattttaaaaaatgtatttcattgtATATATCATGGTTTGAAAATGGAGGTTAAgaatctgattattattattattattattattattattattattattattattattattatagcattCTCCTTGGTTccaaaaaagctaattttttattctttttttaaacagttgattaatttattgatttCTTGATGAaggctgttttttaaattatttatgaaGATAGAGATTCACTGGCAGATATGCTTTTGAATTACaagtatttttaacttttatttacagaattacaATTAATGAACAATCATTATCTCTATTTATTTTCTCCAGCCCTTGTTTCACAATCTGTCAATtatgagaaaaatgaaataaaattttaaataccTTGA
>XR_002651679.1
CGGGGGGAGACACCGGCTTACGACGTCAAAGCACTGGGGTACCTACACGGAGAGAGTGTCCAGACCGCTCATATAGCCCGAGACCAGCTGGACgagcattttccttttttttcctcttcctgTCAGTGGAGGCGCGTTAGAAAGCCGGCGGTCGACATTATAGCAGGAGCGCTCTGTTCAGGGGTAAACAGCGTGAAAGACACGACCGAGCGAGACGCAGCTAAAGgacaccatctctctctctcttatacacacagatacacactgcCTTCACACTCGCTCAGCGTCTCAGCGTCTCCACTgagctcttttattatatcagcATCGCCAGCGGAAAGGACGAACCACAccgacacacagagagagagggagagaggctACGAGAAAACAAGCCAGCATCCACCCCCTCAGGATtaacaaggagagagagacaaacagagggagagagagaccgagaAGAGCAGCAGAGATTCACCATTTGTCATCTTCAAGGAGCCGGGATCATCTGAGGGAAGCCCCTCTTCCGGAGACAGTCTCCCCCTCCGCCTCTGACCGGCCGCCGCGGGCGCCGCGAGTCCGTCCAAATGAAGGAGCCCGACGCCATCAAGCTCTTCATCGGCCAGATCCCCAGGAACCTGGAGGAGAAGGACCTGAAGCCCATTTTCGAGCAGTTCGGCAAGATCTACGAACTGACAGTCATCAAGGACAAGTACACGGGCATGCACAAAGGATGCGCGTTCCTTACATACTGTGCCAGAGAGTCTGCCTTGAAGGCCCAGAATGCATTGCATGAGCAGAAAACATTGCCAGGGATGAACCGGCCCATTCAGGTGAAGCCAGCTGACAGCGAGGGCCGAGGAGACAGGAAGCTGTTTGTGGGCATGCTGGGGAAGCAGCAGTCGGATGCTGATGTGAGGAAGATGTTCGAGCCGTTCGGCAGTATAGAGGAGTGCACTGTGCTCCGAGGGCCAGACGGAGTCAGCAAAGGTTGTGCATTTGTGAAATATCAGAGCAACGCAGAGGCTCAGGCAGCCATCAGCGCTCTACACGGAAGCCGTACTTTACCGGGGGCCTCTTCCAGCCTGGTGGTGAAGTTTGCAGacacagagaaggagagaggcaTCAGGCGCATGCAGCAAGTCGCGTCTCAGCTGGGCGTCATCAGCCCAATGAGCCTTCATTTGGGGGCCTACAATGCTTACACACAAGCACTTGTCCAGCAGCAGGCTTTGGTGGCTCAGTCCGCATACCTGTCTCCCGTAGCAACTGTTGCGGCAGTACAGATGCAGCAGCTGGCTGCACTCAATCCCAACAGCATCATAGCCACACCCATTGCATCAATCACTCCTTCCTCAGGTACGAGCACCCCTCCAGCCATTGCTGCCACACCAGTGCCTGCTCTGCCTCCACAAATTGCAGTCAACAGTTACCCACCCGTGCCTGCCCCACCTAGTGGGCAATCAGCCTCTGAAGCACTGTACACCAATGGAGTCCACCCATATCAAGCTCAGAGTCCTGCCTTGGACCCTCTCCAGCAGGCATACACTGGCATGCAGCATTACACCGCAACATATCCTGCTGCTTACGGATTGGTGGGTCAGCCATTCCCACATCAGCACACCCTGGTTGCTCAGCAACCCCAGCAGccacagcagctgcagcagcgaGAAGGTCCAGAAGGCTGTAATATCTTCATCTATCACCTGCCTCAGGAGTTCACCGACTCTGAGATGCTGCAGATGTTTCTCCCTTTCGGCAATGTCATCTCAGCCAAGGTTTTTGTTGACCGTGCCACAAATCAGAGCAAATGCTTTGGTTTTGTGAGCTTTGACAACCCAGCCAGCGCTCAGACTGCCATCCAGGCCATGAATGGCTTTCAAATTGGCATGAAAAGACTAAAAGTGCAGCTGAAGAGGCCGAAAGATGCCAACCGTCCATACTGAGATGACCAGctCATCCACACCCAAGGCTGCCCCGTCCAATCATAACTGGTGTGGAGACCGCGTCGCTATGGCTACGGTGGCCTAGCAACCAATAAAGCTCTCCCCTTCCTCTCACAGCGTTTGTTgtcAAACAAACGACAAAAAAGAGGACTGAAGAAGTTGGTTTGGAGAGAGTTtaacggaaaaaaaaaacgcaaacaaaaaactttttttttctcagctacAAATTATGGGACCAACTGCTCATTTGAAAGACcagatagaaaagaaaaaaagaaatcacaaCAAATATATACGTTTAACAGATGAACCTAACCTGCAGCACATGGctcaggtgtaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaatctaCATTTACAACCTCATCAGTATACAATATATGACTGAACTATTTGTAGGCACATTCTGTACAGCTAGTCACTGGCTAAAACACTATCGATGCAATGTCACAGACTTGCACATTCTTTCATGCGCACTATTttcaaaagtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgttttgAGCGGTTCCAAGGTGCCGTCTCTTTGTGAACAGACACAGCAACACTCTGCACATAAAATGGGACCAACACAAACACGTCACGTCCGTGCAAGACCTGAGAGCCGGCTTAAGCTCACACTGGACTACTGCAGTCTGGACTGTTGAGCGCCGGTTACGTGTATATAGAAATTTATTCGGGCCATGAGAAGGCATATCAGTCAggggggagggagagaaagagggtgggAAATGGGTGGgttatttatgtttatgatttatttatgcTCATCAGTGCAAAGCATTAAGGGGACGTTAGCTAGAGAAAGAGAATCTTTTGGGTGTTGCGAGTAGAAATCACCTGCAGGCTGAGCTCAGTAGCAACGGAACACAGAAGACAAGGAACATCTGGGAGTTCTGGAAGATCAGGAAGGAGGAAAGAAAAACGGGAAAATTTGGGCCATGGGTGGGAGGCGGTTTAAGAAAATGAATATTGTCCATGACAGTAAGGCCGTAGTTAGATTTTACATTTCTGAATATGTTTAGGAGGATTTTTTCTCATGAGAAAATAGAGTggaaagcattttaaaaaatgtatttcattgtATATATCATGGTTTGAAAATGGAGGTTAAgaatctgattattattattattattattattattattattattattattattattattatagcattCTCCTTGGTTccaaaaaagctaattttttattctttttttaaacagttgattaatttattgatttCTTGATGAaggctgttttttaaattatttatgaaGATAGAGATTCACTGGCAGATATGCTTTTGAATTACaagtatttttaacttttatttacagaattacaATTAATGAACAATCATTATCTCTATTTATTTTCTCCAGCCCTTGTTTCACAATCTGTCAATtatgagaaaaatgaaataaaattttaaataccTTGA

Function

symbol description
celf3a Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3).

NR:

description
PREDICTED: CUGBP Elav-like family member 3

GO:

id name namespace
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230566.3 False 3330 mRNA 0.47 14 9603328 9638916
XR_002651679.1 True 3447 misc_RNA 0.47 15 9603327 9638916

Neighbor

gene id symbol gene type direction distance location
LOC103027509 NA coding upstream 12417 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 44220 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 254610 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 651762 8951493 ~ 8951565 (+)
trnav-aac_54 NA coding upstream 651952 8951303 ~ 8951375 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding downstream 3261 9642177 ~ 9677820 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 347886 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 541537 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 576075 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 576232 10215148 ~ 10215219 (+)
G196329 NA non-coding upstream 175783 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 220778 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 264508 9338069 ~ 9338819 (+)
G196314 NA non-coding upstream 671968 8931149 ~ 8931359 (+)
G196286 NA non-coding upstream 753701 8849360 ~ 8849626 (+)
G196411 NA non-coding downstream 72974 9711890 ~ 9712641 (+)
G196417 NA non-coding downstream 84887 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 86197 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 91862 9730778 ~ 9734673 (+)
G196421 NA non-coding downstream 102424 9741340 ~ 9741835 (+)
mrps21 mrps21 other upstream 63679 9534429 ~ 9539648 (+)
G196232 NA other upstream 923357 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1197858 8143873 ~ 8405469 (+)
G195793 NA other upstream 2309634 7293313 ~ 7293693 (+)
tapbp tapbp other upstream 2476213 7120612 ~ 7127114 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 61824 9700740 ~ 9704709 (+)
G196415 NA other downstream 81867 9720783 ~ 9721270 (+)
G196419 NA other downstream 101443 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 135463 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 419223 10058139 ~ 10061099 (+)

Expression


Co-expression Network