LOC103047595 (cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494)


Basic Information

Item Value
gene id LOC103047595
gene name cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9642177 ~ 9677820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230567.3
CTAGATGCCACGCCTCTTTGATCCGCTACTGTGAGGCGGAGCAGCGTTCCCGCTGAACTCTACCTGAAAACATCTGTCCCCCATATTCACCCTCCCTCGCGGCTGTAGAGCGAATAGAACACAGCCCGCGGCCTCGACCGCACTCAGAGAGCTGCGCGCAGGCGGACAGAGCACGgatgtttgtttagttttggtaGAAATGAGAGAAATGCTGTCGGAGCGGCGCTGAATGAGAGCGGAGCTACAGAGCAGAGAGAAGAAGGTGGTGGAGAGGCGCCTCGGCTCCGGAGATCCAGCAGCACCTCCTCCTCCCCGCTGATCCCGCTCTCCGCCCGGACTCCTCGGGAGAATGAGGAGCGGGTCTCTGAAGGTGCTCCAGTCGGCGGCGGTGACTCCTGAGCGACGGTTAATGGCTCTGTTTGAGTAGAGAAAGTGTGGAAAGAGAGATTGAGCAACTCGAGTTTACCCTCCAGACTCTGAATCACGAGTTcacctccctctccctctcttctacCTGCGGAAACACTCGGACGGAAAATGCTGTCCCAGCTGAGTGAGTGGTTCTGGAATGAGAGGCTTTGGTTTCCTGTGGGTTTGGGCTGGGCTGACATCCAAGATCGAGATGGTCACACCTACGCCAAAGGCTCTGACCTCTGGGTCACCCTCCCCATCGCGCTTGCCTTCCTCATTGTACGGCAGATCTTCGAAAGGACAGTGGCACCTTGGCTCGCATCATTGATGGGTGTAAAAGAGAAAGTACGAGTGCGGGCAGAATCCAACCCAGCACTGGAGTCTCACTTCTGCACTGCGAGCAAACATCCTGCACAGagTGTGGTGGAGAgtttaagtaaacaaacaggCTATTCAGAGCTACAGGTCCAGAGATGGTTCCGGAGACGGCGGAACCAGGAGCGACCCAACCAGCTCAAGAAGTTCAGGGAggccagTTGGAGATTTACGTTTTACCTTCTTGCTTTCATTGCTGGCTTGGGTGCCCTCATTGATAAACCCTGGCTCTATAAAATGGAAGAGGTGTGGAAGGGCTTCCCAACACTGACTCTGCTTCCCTCGCAGTACTGGTACTATATGATTGAACTGGGTTTCTACATGTCCCTTCTGTTCAGCGTGGCATCTGACGTGAAGCGAAAAGATTTCAAGGAGCAGATTGTTCATCATGTGGCTACCATcctcttaatcagtttctcctGGTGTGTGAACTACATTCGAGCTGGAACTCTCATTATGTTGGTGCATGACAGCTCCGACTATCTCCTGGAGTCAGCCAAAATGTTTAACTATGCTGGTTGGAGAAAGACGTGTAACTACATCTTCATCTTATTTGCTGCTGTCTTCTTCGTCACAAGACTTGTGATCTTGCCGTTCTGgATCATGCACTGTACGTGGGTTTATCCAGTGACCATCTATCCTCCATTCTTTGGATATTATTTCTTTAATGGTCTTATGTTCGTGCTCCAGTGTCTACACATCTTCTGGTTTGTGCTCATTCTGCGCATGGCCATCAAGTTCCTCCCTGGAAATCGCATTGTGGAGGATGAGAGGAGCGACCGAGAAGAGACGGATGATTCTGAAGAAGAGGACGcgcaggagaaagagagacatgcCAAAACGAAAAATGGACCGCTGCAGAATGGTCATTCTCCATCCAACAACAACCACCGCAAGATGGAGTAATGGAGTGGAGGGGAGGATGGAGATTATCGTCGATGAAACGTGATCTAGTCCTCCATAGCTGCCTGTagagtgtacacacacacacacacaccacaagaGTAAGACCAGTAGACCGAGGCAGGGCAAGTGGACActtgaattaaaaaacaaaaaaaatacacaaacaactagataaataaaaaatagcctaCAAATATACACACTCATAGAGACACATTTTACCAAGTGTTAGAAGCTGATCTACCACACATTCAAACACTAATCCTAATAGTCCCCGCAACCAGACTTGAAGCCAATaactataaatgttttatttttttgtggtctATGcactaaaaatgcacaaaattcAAGGGGATCTTGAGGCAGCGAGTAAAATCTGGACTTGGTCTTGGTGGTTATTCCTAGTCCAGTGTATGACCTGCCTAGTGCCTTGTTAAAGGAGTGCTCCAGTATATTCCACCCTAATCTCTGTCTGCCACATcagtaaaatacataaacaaatatataacttaaaaaattctaataataaataaaaaaacagaagtacTATTGAAACACCTTATAGAAGCTTAGTTTCGACAGTTGTCCTTCTGTATGTGATTGTTCAATGGCAGCTGGAGATCCGATTGTAAAATGCTGAAGCATCCCTTTAATGTTGGACCTGCACTCGTTCCCCAACTTTTCTTTCCAGCCTGTTGCCTTTTCTGTCTCGTCACTCGCAGGTCACTGTCCCACTCATCTGCTCTTTTATATCTCTCTCACAGGTAAAAATCTCTCTGGCTAGAAAGTCCCATTACTTGCGTACTTCTCGGATACACTCTCAACTCTTGGCTAAAAGATTTCGACTTCATTCCGTGTGCAGTTTCCCAGTTTCACTAAGTGGCCTTTAGCTGAGTCTCCCAACACATTCCTGTGTACGTACCCACACGCTCACTC
>XM_022683014.1
CTGACCCTAGCCGTCTGAAAATGCTGTCCCAGCTGAGTGAGTGGTTCTGGAATGAGAGGCTTTGGTTTCCTGTGGGTTTGGGCTGGGCTGACATCCAAGATCGAGATGGTCACACCTACGCCAAAGGCTCTGACCTCTGGGTCACCCTCCCCATCGCGCTTGCCTTCCTCATTGTACGGCAGATCTTCGAAAGGACAGTGGCACCTTGGCTCGCATCATTGATGGGTGTAAAAGAGAAAGTACGAGTGCGGGCAGAATCCAACCCAGCACTGGAGTCTCACTTCTGCACTGCGAGCAAACATCCTGCACAGagTGTGGTGGAGAgtttaagtaaacaaacaggCTATTCAGAGCTACAGGTCCAGAGATGGTTCCGGAGACGGCGGAACCAGGAGCGACCCAACCAGCTCAAGAAGTTCAGGGAggccagTTGGAGATTTACGTTTTACCTTCTTGCTTTCATTGCTGGCTTGGGTGCCCTCATTGATAAACCCTGGCTCTATAAAATGGAAGAGGTGTGGAAGGGCTTCCCAACACTGACTCTGCTTCCCTCGCAGTACTGGTACTATATGATTGAACTGGGTTTCTACATGTCCCTTCTGTTCAGCGTGGCATCTGACGTGAAGCGAAAAGATTTCAAGGAGCAGATTGTTCATCATGTGGCTACCATcctcttaatcagtttctcctGGTGTGTGAACTACATTCGAGCTGGAACTCTCATTATGTTGGTGCATGACAGCTCCGACTATCTCCTGGAGTCAGCCAAAATGTTTAACTATGCTGGTTGGAGAAAGACGTGTAACTACATCTTCATCTTATTTGCTGCTGTCTTCTTCGTCACAAGACTTGTGATCTTGCCGTTCTGgATCATGCACTGTACGTGGGTTTATCCAGTGACCATCTATCCTCCATTCTTTGGATATTATTTCTTTAATGGTCTTATGTTCGTGCTCCAGTGTCTACACATCTTCTGGTTTGTGCTCATTCTGCGCATGGCCATCAAGTTCCTCCCTGGAAATCGCATTGTGGAGGATGAGAGGAGCGACCGAGAAGAGACGGATGATTCTGAAGAAGAGGACGcgcaggagaaagagagacatgcCAAAACGAAAAATGGACCGCTGCAGAATGGTCATTCTCCATCCAACAACAACCACCGCAAGATGGAGTAATGGAGTGGAGGGGAGGATGGAGATTATCGTCGATGAAACGTGATCTAGTCCTCCATAGCTGCCTGTagagtgtacacacacacacacacaccacaagaGTAAGACCAGTAGACCGAGGCAGGGCAAGTGGACActtgaattaaaaaacaaaaaaaatacacaaacaactagataaataaaaaatagcctaCAAATATACACACTCATAGAGACACATTTTACCAAGTGTTAGAAGCTGATCTACCACACATTCAAACACTAATCCTAATAGTCCCCGCAACCAGACTTGAAGCCAATaactataaatgttttatttttttgtggtctATGcactaaaaatgcacaaaattcAAGGGGATCTTGAGGCAGCGAGTAAAATCTGGACTTGGTCTTGGTGGTTATTCCTAGTCCAGTGTATGACCTGCCTAGTGCCTTGTTAAAGGAGTGCTCCAGTATATTCCACCCTAATCTCTGTCTGCCACATcagtaaaatacataaacaaatatataacttaaaaaattctaataataaataaaaaaacagaagtacTATTGAAACACCTTATAGAAGCTTAGTTTCGACAGTTGTCCTTCTGTATGTGATTGTTCAATGGCAGCTGGAGATCCGATTGTAAAATGCTGAAGCATCCCTTTAATGTTGGACCTGCACTCGTTCCCCAACTTTTCTTTCCAGCCTGTTGCCTTTTCTGTCTCGTCACTCGCAGGTCACTGTCCCACTCATCTGCTCTTTTATATCTCTCTCACAGGTAAAAATCTCTCTGGCTAGAAAGTCCCATTACTTGCGTACTTCTCGGATACACTCTCAACTCTTGGCTAAAAGATTTCGACTTCATTCCGTGTGCAGTTTCCCAGTTTCACTAAGTGGCCTTTAGCTGAGTCTCCCAACACATTCCTGTGTACGTACCCACACGCTCACTC

Function

symbol description
cers2 Enables sphingosine N-acyltransferase activity. Involved in ceramide biosynthetic process. Located in endoplasmic reticulum.

NR:

description
ceramide synthase 2-like

GO: NA

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230567.3 True 2631 mRNA 0.48 11 9642177 9677820
XM_022683014.1 False 2114 mRNA 0.45 11 9652804 9677820

Neighbor

gene id symbol gene type direction distance location
LOC103027509 NA coding upstream 51267 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 83070 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 293460 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 690612 8951493 ~ 8951565 (+)
trnav-aac_54 NA coding upstream 690802 8951303 ~ 8951375 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 308982 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 502633 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 537171 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 537328 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 537529 10215349 ~ 10215419 (+)
G196396 NA non-coding upstream 33356 9607522 ~ 9608821 (+)
G196329 NA non-coding upstream 214633 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 259628 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 303358 9338069 ~ 9338819 (+)
G196314 NA non-coding upstream 710818 8931149 ~ 8931359 (+)
G196411 NA non-coding downstream 34070 9711890 ~ 9712641 (+)
G196417 NA non-coding downstream 45983 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 47293 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 52958 9730778 ~ 9734673 (+)
G196421 NA non-coding downstream 63520 9741340 ~ 9741835 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other upstream 3261 9603327 ~ 9638916 (+)
mrps21 mrps21 other upstream 102529 9534429 ~ 9539648 (+)
G196232 NA other upstream 962207 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1236708 8143873 ~ 8405469 (+)
G195793 NA other upstream 2348484 7293313 ~ 7293693 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 22920 9700740 ~ 9704709 (+)
G196415 NA other downstream 42963 9720783 ~ 9721270 (+)
G196419 NA other downstream 62539 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 96559 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 380319 10058139 ~ 10061099 (+)

Expression


Co-expression Network