utp18 (utp18)


Basic Information

Item Value
gene id utp18
gene name utp18
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10864738 ~ 10878687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230762.3
TGAAGAAGAAGAGGTTTAGTCCATGTGGTGTAAACATGGCGCTGAGAGCACactgcacataaacacacagctgATTTCACTCatactaaaatacagtaaactaCACCGCTGCACTGAAATATTACATCCAGAGGATTATAATCACACAGAATCTGTAGAACAGTAGAATCTGTATTAATCATgatggaggatgaggaggagaggagacTGCAGGAGCTGGTGTTCGGAGCTGAAGAGCAACTTCTACAGAAACTAGAGGAGAGTGATGAGGGCAGTGTGGGAGAAGAATCAAGTGACTCAGAAGAGGAGAATCAGTCTCGTCTTCAGGTTCctacaaaaagaaaagcagcatgggaggatgaggatgatgacGAGGAAGAGGAGGTCGACATGACACACCGGTTTCGCAAGGACTTTAAGAAGAGTGATGTAGAATCCAAAATGTCCAAACAGAAGCTCCAACAGCGGCTAAAGGACCAGTTTCAGAAGTCAATGGGTGGAGCTCCTTCCTGGGCTGAGAAAAGTtctaagaaaagtaagaaaaaaggggatgatgacagtgatgatgaaaaggatgaggatgaagaagaTGACGAGCTGTTAAAGAAGACTGGTAACTACGTTGGTTCATCTGAAAGCCTCCCTAAAGGAATTATTAAGCTAAAGATGTGCCTAAATGCAAATAACGAGAATCCAGGTGAGGATCGACTGACAACAGTGCAGTTCCACCCCTCTGCTCAAGTCGTCATGACAGCTGGACTGGATCACACCATCTCACTCTTTCAGGTGGACGGTAAGACCAATCCCAAGATCCAGAGCATCCACCTCGAGAAGTTTCCGGTGAATAAGGCCTGCTTCAGTGCCAACGGTGAACAGGTTGTGGCCACAGGAATGAAAAACAAGCTCTTCTACATCTATGACATGATGGAGGGGAAAGTAATCCCTGTGCCCAGAGTGAGAGGCCTGAATGAGCAGCGAGTGAAGGAATTTGAAGTTTCTCCAGATGGAGAGTTCCTCCTCCTCACAGGATCCTCAGGATACCTCCATCTCATGACCATGAAGACAAGAGAGGTGGTGCGAAGCATGAAGATGAATGGCAATGTGTGTGGAACAGCATTTACCGGTGACGGCAGTAAGATTTTCGCCAACTCAGATGAGGGTGAGGTGTTTATCTGGGATGTACGCAGCAGTAAGTGTCTGAACAAGTTTGTGGATGAAGGCTGTGTGAGGGGAACGTCTCTGGCCGTGTCGAGGGACGGACTCTATGTAGCGTGTGGTTCTCAGTCTGGTGTGGTGAACATCTACTCCCAGAATACATGTCTGCAGGATTCTTCTCCAAAGCCCTTGAAAGCTGTGATGAATCTGCTGACGGCCGCCACTTCACTGAGATTTAATCCAAATTCTGAGATTTTAGCCATCGCCTCCCGCGCAGAGGATGAAGCCAATCGGCTGGTCCACATTCCAAGCTTTACAGTTTTCTCCAACTTTCCATTATTCCGGAAAAAGACCATCTATCGCTCCCACTGCCTGGATTTCTCCCCCAACAGCGGCTTTTATTCTGTGGCTAACGACAAGGGTCGTGCTGTGCTTTTTAGgctGCTGCATTATAAAGACTTCTGAAGACCTTCACATGAACTTTTTATAATTGTCTGAAGCCTGTTTTTGATCCTGGAGTGTCAAAGAACGTTATATTCTCAGATGACTCTCGTGGAGCAGCAGCTTTGTTAGCTCCGTGTGGAGCACACAGTTCCCAAAACTGCTGAGACCTGCAGTAAATTAGAGATAATGAGCATCTCTGGATGCTCTAATTGGTTTCACAGTGTGGTTTAATTGTGGTTGAATATGTTCAAGCAAGgataaaaacaaatgtatgtGTATGCTTTATGTGAgtgtacattttaataaacatgtcaCAAACAAAGGG

Function

symbol description
utp18 Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Orthologous to human UTP18 (UTP18 small subunit processome component).

NR:

description
PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog

GO: NA

KEGG:

id description
K14553 UTP18; U3 small nucleolar RNA-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230762.3 True 1924 mRNA 0.46 13 10864738 10878687

Neighbor

gene id symbol gene type direction distance location
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding upstream 26451 10819037 ~ 10838287 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding upstream 61627 10796122 ~ 10803111 (+)
LOC103040077 NA coding upstream 93705 10740887 ~ 10771033 (+)
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding upstream 238321 10610474 ~ 10626417 (+)
LOC103042831 LOC108438410,LOC108257051 coding upstream 266575 10593735 ~ 10598163 (+)
LOC103035340 LOC108438873 coding downstream 3088 10881775 ~ 10902503 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 62951 10941638 ~ 10954911 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644,LOC107573070 coding downstream 80179 10958866 ~ 10977959 (+)
LOC103036776 LOC103036776 coding downstream 103897 10982584 ~ 11007579 (+)
ankle1 LOC107575641 coding downstream 174031 11052718 ~ 11062046 (+)
G196684 NA non-coding upstream 1484 10846058 ~ 10863254 (+)
G196697 NA non-coding upstream 7871 10838914 ~ 10856867 (+)
G196687 NA non-coding upstream 52996 10785160 ~ 10811742 (+)
G196686 NA non-coding upstream 83443 10779150 ~ 10781295 (+)
LOC111195506 NA non-coding upstream 227473 10632355 ~ 10637265 (+)
G196702 NA non-coding downstream 25369 10904056 ~ 10906225 (+)
G196712 NA non-coding downstream 77323 10956010 ~ 10957037 (+)
G196727 psmd3,LOC107573823 non-coding downstream 164267 11042954 ~ 11048830 (+)
G196728 NA non-coding downstream 171777 11050464 ~ 11051863 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 462220 11340907 ~ 11341624 (+)
G196633 NA other upstream 372637 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 803639 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 976521 9774379 ~ 9888217 (+)
G196419 NA other upstream 1123970 9740359 ~ 9740768 (+)
G196415 NA other upstream 1143468 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 132354 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 523468 11402155 ~ 11417703 (+)
polr2k NA other downstream 672973 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 808712 11687399 ~ 11746235 (+)
G197106 NA other downstream 1836681 12715368 ~ 12774496 (+)

Expression


Co-expression Network