ube2m (ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069)


Basic Information

Item Value
gene id ube2m
gene name ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10941638 ~ 10954911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230770.3
CTGTCAGTGTTGGTGTTGTTGTGTATTTATGGTCAGTGTTAGTGTAGTTATCTCAGTTTGATTGTGCTCAATGTAAGTGTAGTTGTCTGACTGTGCTAAGTATTAGTGGAGTTGTGCTCAGTGTTGGTTTAGTTGTGTACTTATGGTCAGTGTTAGTGTAGTTGTCTCAGTTGGTTTGTGCACAGTGTTAATGTAGTTGTCACGGACTGTTCTCAGAAATATTGTAGCTGTCTGAGTGTGCTGGTGCTCAGTGTTGGTGTAGTTGTGTAAGAGTGACTGAGCTCCAGTGTTGCTGTAGTTTAGCTCAGTGCTGCTTCTCCCGGCCTGAATGCTGTATTCACATCCATCTCTCTGAGCTTCACCTTTCACCATcaaccccacacacacagtcatacagGACACGGACTCCGGCGCACGGCCAcacaaaacatgattaaactattttctttaaaacagcagaaaaaagatgaagagtCTGCTGGAGGAAACAGAACCGGAGCCGGGGGTAAAAAAGCAAGCGCGGCCCAGCTGCGGATACAGAAAGacATCAATGAGCTGAACCTTCCAAAGACGTGTGAGATTGTGTTTCCTGATCAAGATGATCTACTGAATTTTAAACTCATCATTTCTCCAGACGAGGGCTTCTATAAAGGAGGGAAGTTTGTGTTCAGCTTTAAGGTAGGACAGGGCTACCCTCATGACCCTCCTAAAGTGAAGTGTGAAACGATGGTGTATCACCCCAACATTGACCTGGAGGGCAACGTCTGTCTAAATATTTTGAGagaagaCTGGAAgcctgtgttgacaattaaCTCCATCATATACGGACTACAGTATCTATTCTTAGAGCCAAATCCTGAAGACCCGCTGAACAAAGAGGCTGCGGAGGTGCTGCAGACGAACCGGCGACTTTTTGAGCAGAACGTCCAGCGGTCACTTCGCGGTGGATACGTAGGGGCCACCTACTTTGAGCGGTGTCTGAAATAGTGCCCCGCCTCGGCCAGCGCTTCATACCAAGACACATTTATCGTTTACACACGCTGAGACACTGACTGACACCGacggagagaggaagaggggtGGGGTGGGAGGGGATATTTTGGAGGTGGGTGGGGTTTTAAAGACGGGTGAGGCTTGAAcagtcagttaaaaaaaaaaaaaaagttgctcgGAGAAGGCCGAGGCGATAACAGTAATGAGTAATGCCACTCTGCTGGTGcccactgtttttattttgggatttatttttggttggttcttttttttttgtttgtttaattttggcTGAGATTCATATGGCATCCGTttgatggaaaaaataaaacacagacgcTCCAGTAAGAAAGAAGGGGGGGATTATCCTTTTCTTCCTTGACACTCTGTAGACGTTTCTTTATGAAGGTGGGCCAAGCTCAGCAGAACGTTGAAGCCatttgagctctgtggaggtAGAATGGTGTGCATAtttgactacacacacacacatacacacacacacacttatatattgATAGGAGACCTGTACAGCTgaaccctgacacacacacacgtacactcaTACACTGACTTCACGCACATGTCCAGGACGGACTGACGGACAGACTTATGGACTGACTTACAGAAATACACAAAGGACAGGATCAGTATGCAGGTTTGGCTCTAGAGGATTGGGAGATTATTGTTTGTCAAGGTTTTCTCCATGTGTAATAGTCggaggggggggtggggggagcaGAGAGTTGGATTTTTGTGAAGATGGGCTGGGTTTGGGTTAGGCGGGGTGGCAGAAAATGTTACAATTCTATTGTGTATATTGAAATCCCAGCTGTTCACAATGACTGCAATATGAATTAAGTTGAATAAAATATGGACTTGAATGCTTA

Function

symbol description
ube2m Enables NEDD8 transferase activity and ubiquitin-protein transferase activity. Involved in protein neddylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus.
ubc12 Enables NEDD8 transferase activity. Involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2M (ubiquitin conjugating enzyme E2 M).

NR:

description
PREDICTED: NEDD8-conjugating enzyme Ubc12

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230770.3 True 1883 mRNA 0.45 6 10941638 10954911

Neighbor

gene id symbol gene type direction distance location
LOC103035340 LOC108438873 coding upstream 39135 10881775 ~ 10902503 (+)
utp18 utp18 coding upstream 62951 10864738 ~ 10878687 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding upstream 103351 10819037 ~ 10838287 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding upstream 138527 10796122 ~ 10803111 (+)
LOC103040077 NA coding upstream 170605 10740887 ~ 10771033 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644,LOC107573070 coding downstream 3955 10958866 ~ 10977959 (+)
LOC103036776 LOC103036776 coding downstream 27673 10982584 ~ 11007579 (+)
ankle1 LOC107575641 coding downstream 97807 11052718 ~ 11062046 (+)
LOC103039714 LOC108442625 coding downstream 153130 11108041 ~ 11115372 (+)
cdk12 cdk12,LOC106601005 coding downstream 245386 11200297 ~ 11239603 (+)
G196702 NA non-coding upstream 35413 10904056 ~ 10906225 (+)
G196684 NA non-coding upstream 78384 10846058 ~ 10863254 (+)
G196697 NA non-coding upstream 84771 10838914 ~ 10856867 (+)
G196687 NA non-coding upstream 129896 10785160 ~ 10811742 (+)
G196686 NA non-coding upstream 160343 10779150 ~ 10781295 (+)
G196712 NA non-coding downstream 1099 10956010 ~ 10957037 (+)
G196727 psmd3,LOC107573823 non-coding downstream 88043 11042954 ~ 11048830 (+)
G196728 NA non-coding downstream 95553 11050464 ~ 11051863 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 385996 11340907 ~ 11341624 (+)
G196762 mllt11 non-coding downstream 401626 11356537 ~ 11359180 (+)
G196633 NA other upstream 449537 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 880539 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1053421 9774379 ~ 9888217 (+)
G196419 NA other upstream 1200870 9740359 ~ 9740768 (+)
G196415 NA other upstream 1220368 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 56130 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 447244 11402155 ~ 11417703 (+)
polr2k NA other downstream 596749 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 732488 11687399 ~ 11746235 (+)
G197106 NA other downstream 1760457 12715368 ~ 12774496 (+)

Expression


Co-expression Network