kpnb1 (kpnb1,LOC107570969,LOC107703644,LOC107573070)


Basic Information

Item Value
gene id kpnb1
gene name kpnb1,LOC107570969,LOC107703644,LOC107573070
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10958866 ~ 10977959 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230771.3
gtgcaGCGCGCATGCGCGTGATCGTACCGCGGGAGTCTCGCGGGCCTTTCTTTTCCCTCCGCACGCGGGGCAGAGTGCGAACTGCTGGAACAGAGGAGCAGAGCACGCGGAGCGACAAACAACAAACAGGCGAGGAAACAAACAACCGGCCAAGTGCGGAGAGCCGAGCGAGAGacgggggaaagagagagcggggCATTTCCGAGAGTTCCACTGTTTCATCTGCAGCGCGTTAGCCCCTCTCTTGTAGCCCGAGTGTGAGGTGTTAATCCGGGATGGAGCTGATAACGATCCTCGAGAAAACCGTCTCTCCAGATCAAAATGAGCTGGAGGCGGCGCAGAAGTTTTTGGAGCAGGCAGCGATTGAAAATCTGCCCACTTTCTTGGTGGAGCTCTCCAAGGTGTTGGCTAATCCTGGAAACACCCAGGTAGCCAGAGTCGCTGCCGGGCTGCAGGTGAAAAACTCCCTCACGTCCAAGGACCCTGATGTGAAAGCGCAGTACCAGCAGAGATGGCTGGCCATCGATGGCAATGCTCGCAGGGAGATTAAAAACTATGTGCTGCAGACCCTGGGTACAGAGACGTACAGGCCTAGCTCAGCCTCGCAGTGTGTGGCAGGCATCGCGTGTGCTGAGATTCCAGTCAACCAGTGGCCGGAGCTCATTCCCCAGCTAGTGGCCAATGTCACTGACCCCAGCAGCACGGAGCACATGAAGGAGTCCACACTGGAGGCCATTGGCTACATCTGCCAGGACATTgacccAGAGCAGCTCCAGGACAGCGCCAATCAGATCCTCACTGCCATCATTCAAGGCATGAGGAAAGAGGAACCCAGCAACAATGTCAAACTCGCGGCCACCAATGCACTGCTTAACTCGTTGGAGTTCACCAAAGCCAACTTTGACAAGGAGacgGAAAGACACTTTATCATGCAGGTTGTCTGCGAAGCCACGCAGTGTCCAGACACTAGGgTCAGAGTGGCTGCGTTACAGAACCTGGTGAAGATAATGTCCTTATATTACCAGTACATGGAGACGTATATGGGGCCGGCACTTTTTGCGATTACAATAGAAGCCATGAAAAGTGATATTGATGAAGTTGCCTTGCAAGGAATTGAGTTCTGGTCCAACGTGTGTGACGAGGAAATGGATTTGGCCATCGAAGCTACTGAGGCATCGGAACAAGGACGGCCCCCAGAGCACACCAGCAAGTTCTATGCTAAAGGAGCTCTGCAATACCTAGTGCCCATCCTTACACAGACACTCACCAAACAGgaTGAgaatgatgacgatgatgactGGAACCCCTGTAAAGCAGCCGGTGTGTGTTTAATGCTGCTGGCCACCTGCTGTGAGGATGACGTAGTGCCCCATGTTTTGCCCTTCATCAAAGAACACATCAAGCACCCAGACTGGCGCTACCGTGATGCTTCTGTTATGGCCTTCGGATCCATCCTGGAGGGCCCTGAGGTCAACCAGCTCAAACCTCTCGTTATCCAGGCCATGCCCACTCTGATCGAGCTGATGAAGGACCCCAGCGTGGTGGTCAGGGACACCACTGCTTGGACAGTTGGCAGGATCTGTGACCTGCTGCCAGAGGCTGCCATCAACGAGGTTTATCTGGCTCCTCTCCTTCAGTGCCTTATTGAGGGACTGGGGGCTGAGCCACGAGTTGCTTCCAATGTCTGCTGGGCATTCTCAAGCTTGGCTGAGGCTGCATATGAAGCCACAGATGCTGCAGAGGATCAGGAGGAGCCCAGCACCTACTGCCTCTCTTCTTCCTTCGAGCTCATAGTTCAGAAACTTCTAGAAACCACTGACCGACCGGATGGACACCAGAACAACCTGCGCAGTGCTGCTTATGAGGCCCTGATGGAGATTGTGAAGAACAGTGCTAAGGACTGCTACCCTGCTGTGCAGAAAACAACGCTGGTCATCATGGAGCGCCTGCAGCAGGTTCTGCAGATGGAGTCTCACATCCAGAGCACATCAGACCGAATCCAGTTCAATGATCTTCAGTCTCTGCTGTGCGCCACACTGCAGAATGTCCTGCGGAAGGTACAGCATCAGGATGCTCTGCAGATTTCAGATGTAGTGATGGCATCTCTACTGCGGATGTTCCAGAGCACAGCTGGGTCGGGCGGAGTTCAGGAGGATGCGTTAATGGCTGTCAGCACTCTAGTAGAAGTTTTGGGCAGCGATTTCTTGAAATACATGGATGCCTTCAAACCCTTCCTGGTTATTGGACTTAAGAACTACGCTGAGTATCAGGTTTGTCTAGCTGCAGTGGGTTTGGTGTGTGATCTGTGTAGGGCCCTGTTGGCCAACATTTTGCCTTACTGTGATGAAATCATGCAGCTGCTTTTGGAAAATTTGGGTAATGAGAATGTGCACAGGTCTGTGAAGCCCCAGATCCTGTCTGTGTTTGGTGACATTGCCCTGGCTATTGGAGGAGAGTTTAAGAAATACTTGGAGGTTGTGCTGGACACCCTGCAGCAGGCGTCCCAGGCACAAGTGGACAAGACAGACTATGATATGGTTGATTATTTGAATGAGCTGAGAGAAGGTTGTCTGGAAGCTTACACAGGAATCATCCAGGGCCTAAAAGGAGACCAGGAGAATGTGCATCCTGATGTGATGCTGGTGCAGCCACGTGTGGAGTTCATCTTGTCCTTCATCCACCACATTGCTGAGGACGAGGACCACTCTGATGGAGTTGTGGCGAACGCTGTTGGCCTCATTGGTGACCTGTGCACGACCTTTGGTAAAGACGTGATGAAGTTGGTGGAAGTTCGGCCCCAGATTAACGATCTGCTCACTGAAGGCCGAAGATCCaaaaccagcaagaccaagaccCTTGCCACGTGGGCCACGAAGGAGCTCCGCAAGCTCAAGAGTCAGGCCTGATCTGTTGCTGATCTGGGGGAACCTTCCAGAACCCTTGAAGAGAAGCGTCCCATTGGAGTTAGTTGTGTGTTTTGCACGCGCGAGTGGGAGCAGAAGAGCAGTGCGCTGAGCTGAGTgtctgagagtgagagagcgagtgagagagagagtgaacgtGACAAATGACATCACACCACCTTCTGAGTATAATTCCAGCAGTCGGTTGCCGGCAGACAAATGGCGCCCCCTGTCCCTTCCCCTGAAAAATACAACACGAACACGAAAACCCTCCCCTTCCCGTCTTCTGTCCTTCTTTTCGACTCCTTTCCTTTCACCTGTGGACTGACTGTAACCCAAACGAGGACATCGTGAACTGGATTCTTTTTCCTGCTGTAGATGGCTAGTTCCTATATAGGCTCTTATTAAACCACCAATATTCAACAAACAGCACTGCAAAGAGGAAAGGGGGGCTAACTGCCAAAAGTGTGGTTTGAAAAGGAACGGACCACTTCACTCATTCGATGGATATGTGAacccctttctttctcttttatttgtttttcttagtctttttttttttttttgcctcttaaGCACTATGGAAATGGTAACTGTTCACATTGTCTGACATGGCTCTTACAAGGGAAGGGGAatggaataaataaaaactgccGCCGTGCGACAAGGAAAAGAGATCACTGCTGGAGTTAATGATGGCCGGGGCTGGAGCTGACTGGCCTGCCcgagagtgtgtgtctgtgtgtgtgaggggaggGGGTTCGCTGTCTCTACTTCAACCCCCACCTCTTCTGTTCTTTCAGCtaatgagaataaaaaaaaaatttaaaaatgatacgTAGCTTGATGCAAATTCAGTGAGATATACTTCTGAAGCCTATGTAAGGGAGAGAGAACAGTGATGTGAATGATTGGCGACGGCGCATCACTGACTTACATAAGCTGCTCTTCCCTTAGTTTCTGCAAGTCAATCACTGactttttctgttattttcttactattttgtttgttttacctttttttttttttcttcccctctTTGTCATCAGTGTGGGCTTTTAAGGTTCTTTAGACCCTGTTCATTAGCCTTCGCTAAGGGAGAACATGGCAACTCTAAGGCAAAAGACTGGTTAATACTGTTAGCACTATTGGGAATGCACAAGGGATCATTTGTCTTAGGCTGAAAGCACTTCAATTCAACTCAACACTGAGGTTTATTACACAcctatgtttgtttgttttttattgcaggAAAATGAAAAGTGCCAAATTAATTGATTCTAAACAGGCTAAGTAGGTTAACTGTGCATTGATGCAAATGTAGAATAAGCAATGATGCATTtgcctttttaaaatatataaatataaatatatatatatatatagaaatgcaGCAAGCAAGCCTGTAATTGACCTGTTGATTAGAATGTGCTTGGGATTTTCTGCCCAGTTTAAGCTCTGTTGCCGCACTTGGTTGGGAAAGGGAGACTTCCaagcttctttaaaaaaaaaagatgaaaaaaataaagaaatgaaagaatcAGATGTTTGTATAAGGTTATATTTTTCCATTGCTCTTGAAAGAACCCAGAATAAAATATCGAACATTCCCCTGTCGGTTGTTGGGTTAATTCGTATTTTTACTGTGCCAGGGAGGTGTAAACAAAATGTGACTCTACTCCGGTTTCCACAACAACCCTGTTGCTACAAAGACCCTTCAAGCaggattttttcttttctttttgtccttttacttttcttactttttcctTTTGAAGTTTGCAGCAGAAGTGCCCCCCCTTCCAAGGATATTGAAATAATTTACCTGCTTTTTGTAAATGTGTTAGATAATTAATTGGTTTGGGGGAGGCATTTCCGCTTGGTCAAGTCACTTCTGCGGTGTTCACATTGCGCAGGTTGTGAACATTCAAGCCGTCGTGTGCTTGTAAAGGTCCttataaaagctaataaatgaGTCATTAAAAA

Function

symbol description
kpnb1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; nervous system; and neural keel. Orthologous to human KPNB1 (karyopherin subunit beta 1).

NR:

description
PREDICTED: importin subunit beta-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K14293 KPNB1, IPO1; importin subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230771.3 True 4890 mRNA 0.48 22 10958866 10977959

Neighbor

gene id symbol gene type direction distance location
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding upstream 3955 10941638 ~ 10954911 (+)
LOC103035340 LOC108438873 coding upstream 56363 10881775 ~ 10902503 (+)
utp18 utp18 coding upstream 80179 10864738 ~ 10878687 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding upstream 120579 10819037 ~ 10838287 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding upstream 155755 10796122 ~ 10803111 (+)
LOC103036776 LOC103036776 coding downstream 4625 10982584 ~ 11007579 (+)
ankle1 LOC107575641 coding downstream 74759 11052718 ~ 11062046 (+)
LOC103039714 LOC108442625 coding downstream 130082 11108041 ~ 11115372 (+)
cdk12 cdk12,LOC106601005 coding downstream 222338 11200297 ~ 11239603 (+)
LOC103041779 ppp1r1b,LOC103041779,LOC108442635,LOC102193916,LOC101463831,LOC102293829 coding downstream 266997 11244956 ~ 11284551 (+)
G196712 NA non-coding upstream 1829 10956010 ~ 10957037 (+)
G196702 NA non-coding upstream 52641 10904056 ~ 10906225 (+)
G196684 NA non-coding upstream 95612 10846058 ~ 10863254 (+)
G196697 NA non-coding upstream 101999 10838914 ~ 10856867 (+)
G196687 NA non-coding upstream 147124 10785160 ~ 10811742 (+)
G196727 psmd3,LOC107573823 non-coding downstream 64995 11042954 ~ 11048830 (+)
G196728 NA non-coding downstream 72505 11050464 ~ 11051863 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 362948 11340907 ~ 11341624 (+)
G196762 mllt11 non-coding downstream 378578 11356537 ~ 11359180 (+)
G196914 NA non-coding downstream 484768 11462727 ~ 11483867 (+)
G196633 NA other upstream 466765 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 897767 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1070649 9774379 ~ 9888217 (+)
G196419 NA other upstream 1218098 9740359 ~ 9740768 (+)
G196415 NA other upstream 1237596 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 33082 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 424196 11402155 ~ 11417703 (+)
polr2k NA other downstream 573701 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 709440 11687399 ~ 11746235 (+)
G197106 NA other downstream 1737409 12715368 ~ 12774496 (+)

Expression


Co-expression Network