naxe (naxe,LOC107693306,LOC107753479,LOC107669985,LOC107559716)


Basic Information

Item Value
gene id naxe
gene name naxe,LOC107693306,LOC107753479,LOC107669985,LOC107559716
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11329509 ~ 11334751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230793.3
attttgaaaggctTCTCCGCCATTGTGAAGAACCAACAGGGTCACTGTTTCTACAGagcttacattttatttaagtattcAGGCGAAAACAGCTGCTGGATTAAATTGTAAATAACTCTTCTCTGATTATTATACAGACCGAACACAGCGGAGGTGCAGTGCGCGGGTGGATGTTGGGGTTGAGAGCCCTGTTTGGCCTTGGTCTCCTCGTGACTTCACGGGGGGTATCTGTCCTCGCCCACAGAGTAGCACATGCACATGTGTGTGAGAATACCTACAGAGCGTCCTCGGCTAGACAGGCCTGCACCATGGCCAACTCCATCAAATACTTAGGgcAGGAAGAAGCTCAGCGAATTGACGAGGAGCTTTTTTCAGAGTACAGCTTCAGTGTGGATCAGTTAATGGAACTTGCAGGACTAAGTTGTGCTACCGCCGTTACAAAGggTTATCCCTTGCAGTCTCTGATCAAGAGTCCACCGAGAGTTCTGGTGATTTGTGGCCCAGGCAATAATGGAGGAGATGGGTTGGTGTGTGCTCGTCATCTCAAACTGTTTGGCTATGAGCCTTCTGTTTTATATCCAAAGAGGCCAAACAAACAGCTCTTCCAGAATTTGACCACTCAGTGTGAGAAGATGGAGATACCGCTCCTGTCTGGGTTGCCTGAGGCAGATGAAATCGATGAAGTTTATAATGTGGTGGTCGACGCCGTCTTTGGCTTCAGCTTTAAGGGTGCAGTGCGAGAGCCCTTTGGAGACATTTTATCCACACTAAAAAAGATCAGCATTCCAATCGCTAGTGTGGACATCCCATCAGGTTGGGATGTGGAACTGGGCGGGCGTGATGGGATCCAGCCGGACATGCTGATCTCGCTCACTGCCCCGAAGAAAGCAGCGGAGCACTTTAAAGGACGCTACCATTACCTGGGAGGGCGGTTTGTCCCTCCAGCTCTGGAGAAGAAATACAGCCTGAGGTTGCCTGAGTACCCTGGCACTGAGTGTGTGTACCAGCTCAACTGAGGGGGAGGAGGAGTGTGAAACATTAATGTACCtttaacagcattaaaaaacattactgtATTGGGTGAACTAGTAGTCTGAGCACTTTTGGAATTTGAACAGAaggatgtttaaatgttaaacaatAATTGTTGTGTTGGAAGGATTGAAAGTTAGTCTGatgtataaatattttcaaAGGAGAGTTTATTTTTGATCGAATGTAATTAAATGTCACAGACTGTTCTGAGCATTAA

Function

symbol description
naxe Predicted to enable NADHX epimerase activity. Predicted to act upstream of or within lipid transport. Predicted to be located in extracellular region. Predicted to be active in mitochondrion. Orthologous to human NAXE (NAD(P)HX epimerase).

NR:

description
NAD(P)H-hydrate epimerase-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K17759 NAXE, nnrE; NAD(P)H-hydrate epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230793.3 True 1252 mRNA 0.46 7 11329509 11334751

Neighbor

gene id symbol gene type direction distance location
LOC103042600 zgc:91968,mreg,LOC108442626,LOC107549879,LOC107665136,LOC107748915 coding upstream 1573 11321902 ~ 11327936 (+)
stard3 stard3 coding upstream 11957 11291176 ~ 11317552 (+)
LOC103041779 ppp1r1b,LOC103041779,LOC108442635,LOC102193916,LOC101463831,LOC102293829 coding upstream 44958 11244956 ~ 11284551 (+)
cdk12 cdk12,LOC106601005 coding upstream 89906 11200297 ~ 11239603 (+)
LOC103039714 LOC108442625 coding upstream 214137 11108041 ~ 11115372 (+)
sf3b4 sf3b4 coding downstream 8358 11343109 ~ 11346902 (+)
mindy1 fam63a,LOC106569905,LOC106588341 coding downstream 26236 11360987 ~ 11376005 (+)
prcc prcc coding downstream 84978 11419729 ~ 11426659 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding downstream 99428 11434179 ~ 11447477 (+)
adck5 adck5 coding downstream 115375 11450126 ~ 11482391 (+)
G196728 NA non-coding upstream 277646 11050464 ~ 11051863 (+)
G196727 psmd3,LOC107573823 non-coding upstream 280679 11042954 ~ 11048830 (+)
G196712 NA non-coding upstream 372472 10956010 ~ 10957037 (+)
G196702 NA non-coding upstream 423284 10904056 ~ 10906225 (+)
G196684 NA non-coding upstream 466255 10846058 ~ 10863254 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 6156 11340907 ~ 11341624 (+)
G196762 mllt11 non-coding downstream 21786 11356537 ~ 11359180 (+)
G196914 NA non-coding downstream 127976 11462727 ~ 11483867 (+)
G196918 NA non-coding downstream 152066 11486817 ~ 11487100 (+)
G196923 NA non-coding downstream 158826 11493577 ~ 11500681 (+)
samd14 samd14 other upstream 298240 11011041 ~ 11031269 (+)
G196633 NA other upstream 837408 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 1268410 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1441292 9774379 ~ 9888217 (+)
G196419 NA other upstream 1588741 9740359 ~ 9740768 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 67404 11402155 ~ 11417703 (+)
polr2k NA other downstream 216909 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 352648 11687399 ~ 11746235 (+)
G197106 NA other downstream 1380617 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1554607 12889358 ~ 12928527 (+)

Expression


Co-expression Network