sf3b4 (sf3b4)


Basic Information

Item Value
gene id sf3b4
gene name sf3b4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11343109 ~ 11346902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230795.3
AACGTGTTAGCAGCGGAAGAGGATCACCCGCAAACTTCCGTTTTTCCGCCAGCGCGTCGTTCATCATGGCGGCGGGTCCGATATCAGAAAGAAACCAGGATGCTACGGTATATGTAGGCGGTCTGGATGAAAAGGTTTCGGAGCCGCTGTTGTGGGAACTCTTCCTGCAAGCTGGACCAGTGGTCAACACACACATGCCCAAAGACAGAGTCACAGGGCAACATCAGGGTTATGGCTTTGTGGAGTTCCTCAGTGAGGAAGATGCTGATTATGCCATAAAGATCATGAACATGATCAAGCTGTATGGTAAACCAATACGAGTCAACAAAGCTTCAGCACACAACAAGAACTTAGACGTGGGTGCCAACATCTTCATCGGGAACTTGGACCCCGAAATCGACGAGAAGCTGCTTTATGATACTTTCAGTGCTTTCGGCGTCATCCTTCAGACACCCAAGATTATGCGTGACCCGGACACAGGCAACTCCAAGGGTTACGCTTTTATCAACTTTGCCAGTTTTGATGCCTCTGATGCTGCAATTGAAGCCATGAATGGCCAGTACCTCTGTAATCGACCAATCACAGTCTCTTACGCCTTTAAGAAGGATTCCAAAGGTGAGAGGCACGGCTCAGCAGCCGAGCGTCTCCTGGCTGCACAGAACCCTCTCTCGCAGGCTGATAGGCCACATCAGCTGTTTGCAGatgccccgccccctcccaCTGCACCTACGCCTGTAATGACCACACTGGGAGCAGCCATTCCCATTCCAGGCATGCCTCCTCCTGGCGCATTCCCCCCTGTGCCACCCCCAGGCTCAATGCCACCTGGAATGCCCCCTGGCATGCCCATGCCCCTTGCTCCAGGGACACCTTCCCCTCAGGGCGGTGCTACAGGACCTCCCCCAGGACCACCGCCCTTCCCACCTGCTGGAATGCACCCTCCAGGTATGCCACCTATGCCAATGCCCCCTACTGGACCACCAGGTATGGTGCCACCACCCCCTGGCCCCCCTGGTACCACTCGGGCACCGCCTCCACCAGGCATGCCTCCTCCTCCACAGATGGGCATGCCCCCCAGAGGACCATTTGGACCACCCATGGGTCCCCCTATGCATCCAGGCATGAGGGGTCCCCCTCCCCCAATGCCACCTCCGGGCTATGCCGGAGGACCACCCAGACCGCCTCCGTTTGGTTTCCAGAGAGCACCTCCCATGCCCCCAAGACCCCCAGCACCACCCAGAGGACCCATACGTGCACCTATGCCTCCTTAAAAAGAGtgttaactttttattatttgaattgTCACGTTTTTATATTCATTAGTTCATGGACGACAAGAAATTTAATTTCCTTTCATTTTTGCTCACTGTACTTTCTTTAGAAtggaataaacatttttttatagaaatga

Function

symbol description
sf3b4 Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Nager acrofacial dysostosis. Orthologous to human SF3B4 (splicing factor 3b subunit 4).

NR:

description
splicing factor 3B subunit 4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12831 SF3B4, SAP49; splicing factor 3B subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230795.3 True 1411 mRNA 0.54 6 11343109 11346902

Neighbor

gene id symbol gene type direction distance location
naxe naxe,LOC107693306,LOC107753479,LOC107669985,LOC107559716 coding upstream 8358 11329509 ~ 11334751 (+)
LOC103042600 zgc:91968,mreg,LOC108442626,LOC107549879,LOC107665136,LOC107748915 coding upstream 15173 11321902 ~ 11327936 (+)
stard3 stard3 coding upstream 25557 11291176 ~ 11317552 (+)
LOC103041779 ppp1r1b,LOC103041779,LOC108442635,LOC102193916,LOC101463831,LOC102293829 coding upstream 58558 11244956 ~ 11284551 (+)
cdk12 cdk12,LOC106601005 coding upstream 103506 11200297 ~ 11239603 (+)
mindy1 fam63a,LOC106569905,LOC106588341 coding downstream 14085 11360987 ~ 11376005 (+)
prcc prcc coding downstream 72827 11419729 ~ 11426659 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding downstream 87277 11434179 ~ 11447477 (+)
adck5 adck5 coding downstream 103224 11450126 ~ 11482391 (+)
LOC103022883 LOC108438857 coding downstream 209170 11556072 ~ 11577909 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding upstream 1485 11340907 ~ 11341624 (+)
G196728 NA non-coding upstream 291246 11050464 ~ 11051863 (+)
G196727 psmd3,LOC107573823 non-coding upstream 294279 11042954 ~ 11048830 (+)
G196712 NA non-coding upstream 386072 10956010 ~ 10957037 (+)
G196702 NA non-coding upstream 436884 10904056 ~ 10906225 (+)
G196762 mllt11 non-coding downstream 9635 11356537 ~ 11359180 (+)
G196914 NA non-coding downstream 115825 11462727 ~ 11483867 (+)
G196918 NA non-coding downstream 139915 11486817 ~ 11487100 (+)
G196923 NA non-coding downstream 146675 11493577 ~ 11500681 (+)
G196926 cpsf1,LOC107550069 non-coding downstream 163788 11510690 ~ 11516573 (+)
samd14 samd14 other upstream 311840 11011041 ~ 11031269 (+)
G196633 NA other upstream 851008 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 1282010 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1454892 9774379 ~ 9888217 (+)
G196419 NA other upstream 1602341 9740359 ~ 9740768 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 55253 11402155 ~ 11417703 (+)
polr2k NA other downstream 204758 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 340497 11687399 ~ 11746235 (+)
G197106 NA other downstream 1368466 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1542456 12889358 ~ 12928527 (+)

Expression


Co-expression Network