prcc (prcc)


Basic Information

Item Value
gene id prcc
gene name prcc
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11419729 ~ 11426659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230807.3
GCGGCGCTCACACCCCAAGCCTGTAAACGGAGGAGGGAGCAAGGCTTCGTTTTGTTTACAGATGCTTTAGCTGCTAGCAGGCTAACTGCTCTTTTAAACCCGAGCGCCGGCGGATTATCGTCATATTTTCACAGTAGAAGAGAGAATGCGAGCtttataagttattattagaCATAAGCTGTAGTTACAGTGTCTGAGTAGGGTGACCGCAGCGAGCCCGCAAAGAGAGCGTGTGTGTCAGTCTtcagagctacaggatctaatAATAATCCACAGTAAAGACCGATAACTGATCATTACTGTCTGAACCGGTCAACGTTTCCCTTCTCTATTACAGCCACATGAACAGCCTAAGATTATTACACAGTAATACACTCACTCAGCGACCGCGAGAGAAAGGTCTGAGGGGAGAGGGGGTTAAATCGTTAGTAAAGccgttagttagttagttagttagttagttagttagttagttagttagttagttagttagttatctAGGTGAACAGTCTGAGTGGAGTCCGCAGCCCCTGCGCTCTGCGATGTCTCTGGTTTGCTACGACAGCAGTGATGAGAGTGACCGGGACGAAGCTCCGAGTCCAGCGGCCGCACGACCCGAGCAGAGCCGGggtcctcctgctcctcctcccgCCGAGAGGAAGCTCGTGTTAGACCTGCCGAAGCCGAAAAAGCGCGGAGAGCCGGTGAAAATCTCCGTCCCAGAGATTAACGCAGCGAGTTCAGATTCAGATGAAGATGAACCAGTGAGGAAGAAGGCAGGAATTTCGggTGGCGGTCTGTCGTCTATGCTACCACAACCTAAAAACCTAGTGTTGAAAGAAACACAGCGCCCACTGGTGCCTCATACCCTCACTAAACGGCCAGCACCAGCACCGCAGTCAAAAGGGACCAAACCAGGCTCTCAGGCTCAATCTGGAACGAGCCCTTCACCGTCTGCGATTAAAGCTGCAGCAAAATCTGCTGCGCTGCAGCTGGCCCGGCAGATGGCAGCAGATGAAGAGGGAAGTGATGATGAACTTGCGCCAGAAAACTATTTCTCCTTGGCTGAGAGCTCCACACAACCCCTGGCTGCTGCTTACCCAGATACTCAGCTGTACACCCCTTCCCTAAACTCTCCACCCAGCATAGAGGACGCCCCCCTCGACTTCGGCTCTAAAGCGGAGCCACAAAACAAACCTACATGGGCTGCACATGACTTTCAGAGTGGTGACTACCAAACCCTAAGTCAGGAACAACAGGATGCATCATCAGAACTTTGTGCTCAGgactATTATAGCGAAGGGTACTACCAGGACCAGGGTGCTGAGTTTATTGAAGAAGAGCCAGGATCCTCCACTCTGTTCAATGATGAAGCATTCCGTAGGCTACAGGGCAAACAGAATCGAGGGAAAGAAGAAATTAAGTTTTTGGAAATTAAAGGTGATGACCAGCTGAGTGGGAATCAGCAGTGGATGACCAAGAACATGAGCGCAGAAACAGAGCCTCGCAAATCCTTCAGTAAGAAAAAAGGAGATCAGCCAACAGGACAGCAGAGACGCAAACATCAGATCACATATCTGATTCATcagGCTAAGGAGCGTGAGCTGGAGCTGAAAAATAACTGGGCAGATAACAAAGTCTCTCGGCGACAGACACAGGCCAAGTATGGATTCTAGCGGATGTCTGGCTTATAGGCTTGTTAGCTTTGCTAACTAAAATGTGAGTCTGGGTTTACAGAGACTCTGTAGACAAAGTGGACATCTGGACACCATTAGAATTCTTTCATCACTGCCGGGCCTGCACGTAATAACCCATCTAAGTGAGGGATCTGAAGACACACTCTCATTGTCCACTTTAGTCCTGCTGCACATTAACAGATATATCAGTGGGCATTGTGTGTGCTGCTCGATGGAACCCAAAAAAGTCATACTAGTCAACCCCTTACTTCCCCCATCTTCCCGTCTGTGTTGTTGAATGTTGTATAcagttttacttttgttttgtaACCATTATAAACTTGTACCATCTCATAAAATATTCCCTGTAACTCTGTAAATTGTTTCGGCCCAGTCAGGTCCAGGTTCACgttgagtaaaatgtaaaacattatcTGATGATCTGTAAATTAGAACTTTTTAAATTAGTCTTCCCAAAATAAGTATTTTGAATGATTCCTTAGTTAAAGAAGATACTTTTCCTTTACTTTCTagttaaaataaactgtaatttgtCTTAAAGAACAGATCTAGAGAAGAAGCCAATAGAAACATACTTCTGGAAGTGTCTATTGACTTCTGTTGTGAGTTTTGTATTACTGGGTTCTCTGCTTTTCAATCTTAGCATAAAGGCTTCTGCAAAAGACTAAAAATCAGTTATTTAACTCATAACAGTAGtggaacactttttttattgtactataTAATCAAAATACCCTTTTCCTTGTGTATGAAGAACCCGGATTGCTAATTGACTTTATGAATCGTGTAGTTAGATGCCTCTATAGCACAACAGGCTGGTCACCTGGACAGGGCTTAGCTttggatttttaatttaataggaaatctttcaaaatgctttataatgcaGGAATAGGCATAATTCCTGTCTGGGAGACTGGCCTTTTATCAGGGTTAtatgtaaaaaaggaaaaattctGAAGCTCACTACACTATTTTGGAGTCTGTGAATTTCAGcacagtatttattttgttactgattaaaataaatattagaccAGGGGTATTTGGATGAATTTAAAATCTTCCCAGCTTATAAATGTATACCAGCGTCATCCTTTTGCTTGCTGACCCATCTCCATAACTGTATTAGCCTGGTTTGGATCAGGCTAAAAGTGTACTACCCTgaacatattaaataaatagcaGAATATAAATAGAGCAGGtaatatattttcaatatattacttttttctATGGATAACTAGTAAACCACCAGTGGGTTGTAATGTTAAAGGATTTTTGGTACATGTCGGGATCCTGTAAAAGTAACCGTATATAAAGTTTGAACCTGATAACACACTCCTGTATCTGTGTTCTGATCCAGCCTGTTAGTCTGATCTGCATGAACATTAACAGAACCCGGAAGGACAGTTGGCAAAGTGTGTTTAAAGAGCTCATCTACTCACTGCCAGAAACAGCAGAGTAAGAAAGGCAGGCTTTTAATGTGAAGCtgcagataataataaaaacatgtctaaaaaa

Function

symbol description
prcc Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in papillary renal cell carcinoma. Orthologous to human PRCC (proline rich mitotic checkpoint control factor).

NR:

description
PREDICTED: proline-rich protein PRCC-like

GO: NA

KEGG:

id description
K13105 PRCC; proline-rich protein PRCC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230807.3 True 3221 mRNA 0.43 7 11419729 11426659

Neighbor

gene id symbol gene type direction distance location
mindy1 fam63a,LOC106569905,LOC106588341 coding upstream 43724 11360987 ~ 11376005 (+)
sf3b4 sf3b4 coding upstream 72827 11343109 ~ 11346902 (+)
naxe naxe,LOC107693306,LOC107753479,LOC107669985,LOC107559716 coding upstream 84978 11329509 ~ 11334751 (+)
LOC103042600 zgc:91968,mreg,LOC108442626,LOC107549879,LOC107665136,LOC107748915 coding upstream 91793 11321902 ~ 11327936 (+)
stard3 stard3 coding upstream 102177 11291176 ~ 11317552 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding downstream 7520 11434179 ~ 11447477 (+)
adck5 adck5 coding downstream 23467 11450126 ~ 11482391 (+)
LOC103022883 LOC108438857 coding downstream 129413 11556072 ~ 11577909 (+)
LOC111195553 NA coding downstream 252272 11678931 ~ 11682473 (+)
psmg2 psmg2 coding downstream 386566 11813225 ~ 11821844 (+)
G196762 mllt11 non-coding upstream 60549 11356537 ~ 11359180 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding upstream 78105 11340907 ~ 11341624 (+)
G196728 NA non-coding upstream 367866 11050464 ~ 11051863 (+)
G196727 psmd3,LOC107573823 non-coding upstream 370899 11042954 ~ 11048830 (+)
G196712 NA non-coding upstream 462692 10956010 ~ 10957037 (+)
G196914 NA non-coding downstream 36068 11462727 ~ 11483867 (+)
G196918 NA non-coding downstream 60158 11486817 ~ 11487100 (+)
G196923 NA non-coding downstream 66918 11493577 ~ 11500681 (+)
G196926 cpsf1,LOC107550069 non-coding downstream 84031 11510690 ~ 11516573 (+)
G196940 NA non-coding downstream 147372 11574031 ~ 11575281 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 2026 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 388460 11011041 ~ 11031269 (+)
G196633 NA other upstream 927628 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 1358630 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1531512 9774379 ~ 9888217 (+)
polr2k NA other downstream 125001 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 260740 11687399 ~ 11746235 (+)
G197106 NA other downstream 1288709 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1462699 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1530011 12956670 ~ 12964349 (+)

Expression


Co-expression Network