med10 (med10,LOC107595625,LOC107691542,LOC106588698)


Basic Information

Item Value
gene id med10
gene name med10,LOC107595625,LOC107691542,LOC106588698
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16695596 ~ 16701247 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231709.3
TTCTGTTAAAAAGATTTGGATCAGAAGAAAAGCCCTCAGACATCAGGTTTTCTGCTTATTAAACGAGTAAAAAGAGCTTTCACCTTAACTCACAGGAGCAACACAGCCCAGGTTTTGATGAAATAGTAATGAATTAATTCGTGCCGCTGGTTTATTTTATCGCtcgtttatgtttttttatgagcGTTATTGTGCAGCTCTCAACTCAGTGACCTAATCTCTGTACGACATTTTGCAACAGTCCGATACGCCTGTGAAACCCGTTGCTATGACAACTGGTTAACCGTGGTCTGCGGTTGGTTGTGGATCTGCCGGAAAGAGAGCGGCTGTAGACGGGAGCTAGCCGCTTTAGCTTAGCTGTGCTATGAGGCTGTGCTGTGCTGATGTTTTAGTTACAGGTTTAGTTCTGGAtctgtaaaaacacacagaacagccTCTAAACATGGCGGAGAAGTTCGATAACCTGGAGGAACATCTGGAGAAGTTTATCGAGAACATTCGGCAGATGGGGATCATAGTGAGCGACTTTCAGCCCAGCAGCCAAACAGGACTCAACCAGAAACTGAACTTCATGATCACTGGACTGCAGGACGTTGAGAAATGTCGGCAACAGCTTAATGATATCCATGTACCTTTGGAAGCATTCGAatacATCGATCAGGGTCGCAACCCCCAACTGTACACTAAAGAGTGCTTGGAAAGAGCCTTGGCTAAAAATGAGCAAGTGAAGGGGAAAATTGACACAATGACAaaatttAAAAGTCTTCTCATCACTGAGCTGGGGAAAGTTTTTCCAGAAGAAATGGCCAAGTATAAAGCCATCCATGGAGATGACCCTCCTTCATAATCATAATGATTTCAACAGCATTACTAAATGCCAATTTGTACATATGCTGATATTCACTTTTTTATAAAGTTCAAAGCGTCCACcatgttttgcatttttacaggtttttcagtgtttgtatTTGCCTTTGTATTTCATGAATATATTGCTTATACTCCAGGCGGTCTGAGGTGTTTTGTAACCTCAGAAAAATTGAGTTTGATTGCTGCATAAGGTATTGTGTAATTTCTTTTTGTTggctctttttaaataaatgattatttaaagtTCAGCATAA

Function

symbol description
med10 Predicted to enable transcription coregulator activity. Acts upstream of or within atrioventricular canal development and cardiac jelly development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Predicted to be active in chromatin. Orthologous to human MED10 (mediator complex subunit 10).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 10 isoform X1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231709.3 True 1124 mRNA 0.41 4 16695596 16701247

Neighbor

gene id symbol gene type direction distance location
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 62144 16599287 ~ 16633452 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding upstream 440964 16229507 ~ 16254632 (+)
LOC103032568 NA coding upstream 835932 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 895363 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 942656 15748550 ~ 15752940 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 593644 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1233446 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1402569 18103816 ~ 18127521 (+)
LOC103029482 LOC103029482 coding downstream 2149280 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 2205339 18906586 ~ 18924321 (+)
G198092 NA non-coding upstream 17812 16673080 ~ 16677784 (+)
G198053 NA non-coding upstream 129773 16547899 ~ 16565823 (+)
G198051 NA non-coding upstream 168956 16525827 ~ 16526640 (+)
G198050 NA non-coding upstream 170224 16524669 ~ 16525372 (+)
G198045 NA non-coding upstream 206547 16485029 ~ 16489049 (+)
G198163 NA non-coding downstream 445733 17146980 ~ 17147227 (+)
G198173 NA non-coding downstream 532629 17233876 ~ 17241559 (+)
G198172 NA non-coding downstream 557953 17259200 ~ 17264139 (+)
G198283 NA non-coding downstream 1415467 18116714 ~ 18117099 (+)
G198304 NA non-coding downstream 1458149 18159396 ~ 18159608 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 265062 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 302098 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 335928 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 365356 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 905742 15761923 ~ 15789854 (+)
G198344 NA other downstream 1683380 18384627 ~ 18385072 (+)
G198397 NA other downstream 2157285 18858532 ~ 18863366 (+)
G198400 NA other downstream 2186222 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 2403160 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 2465099 19166346 ~ 19182478 (+)

Expression


Co-expression Network