nsun2 (nsun2,LOC107694333,LOC107691499,LOC107711338)


Basic Information

Item Value
gene id nsun2
gene name nsun2,LOC107694333,LOC107691499,LOC107711338
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16599287 ~ 16633452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231711.3
CCGCAGGTCCTTTCGCTGCTGTGTGGCGTTTTGAGTTTCCCTGAGCCCCACATgagtttagctttagcattagctttagcataagCTGCAGCTCCAGTCTAGCTCAGGATCTGTTTGAAGAGTTCAATCTGCGGCTCCAGGCGTTCCAGAGGTTCATATCCAGGGTCGTGTGTGTCTCCGACATGGGTAAAAGGAACAGAAACAGAGGGAGGAATGGAGGAGGCCGGGACGGAGGAGCGGAGGGGAAGAGGGACAGAGATTCTGGTTGGGGTGCCGGCTATGCTGACATCATCAAGGAGAATAAATTGTTTGAGCAGTACTACCAGGAGCTGAAGATTGTGCCAGAGGGAGAATTTGAGGAATTTATGGAAGCTATGAGGGAGCCCCTACCTGCTACAATACGAATCACTGGATACAAAAGCCATGCCAAAGAAATTCTCCATACCCTCAAAGAGAAGTACTTTAAGGACATTCAGGATCTAGAGATAGATGGTCAGAAGATTGAAGCCCCACAGGCTCTGTCCTGGTACCCTGATGAACAGGCTTGGCACACCAACATGAGTAGAAAGATTCTGCGGAAGTCACCGCTTCTGGAAAAGTTCCACCAGTTCCTAGTCAGCGAGACTGAGTGTGGAAATATTAGCAGGCAGGAGGCTGTCAGTATGATTCCTCCTCTTCTGTTGAAAATTGAGCCTCACCATAAGATTCTGGACATGTGTGCTGCTCCAGGATCAAAGACTGCTCAGCTGATCGAGATGCTGCATTCTGATATGGATGTGCCTTTCCCTGAGGGCTTTGTAATTGCTAATGATGTGGATAATAAGCGCTGTTACCTGCTGGTGCACCAGGCTAAAAGGCTGAACAGTCCATGTATCATGGTGGTGAACCACGATGCCTCCTGCATCCCGCGCCTGATGGTGGAGCAAAACGGCACAAAAGATGTACTCTTCTATGACAGAGTGCTGTGTGACGTGCCATGCAGTGGCGATGGGACGATGAGGAAGAACATAGACGTGTGGAAGAAATGGACAACCAGCAACAGCTTACATCTTCATGGACTGCAGCTGAGGATAGCAGTGCGTGGCGTGGAGCAGCTGGCTGTGGGTGGCAGGATGGTTTACTCCACCTGCTCCCTGAACCCCATCGAGGATGAAGCAGTCATTGCATCCCTGCTGGAGAAAAGTGAAGGCGCATTAGAGCTGGTCGATGCCTCTGCTGATCTGCCAGGCCTGAAGTACATGCCAGGAATTACATCCTGGAAGCTGATGACCAAAGAGGGCCAGTGGTATTCTGACTGGTCCGAGGTGCCCACAAATCGACACACTCAGATCAGACCCACCATGTTCCCTCCGACCGACCCAGAGAAACTGCAGAGCATGAAGCTGGAGAGATGtATGAGGATATTACCACATCACCAGAACACTGGTGGCTTTTTTGTGGCGGTGCTGATGAAGAAAGGGCCCATGCCGTGGAACCGCCGCCAACCGAAGCTCAGGAACAAGGGGGCCACCCCCTCCACAGCCCAACCAGAGGAGCCTCCTGCTGAAGAGGGAGATGGGGAGACCCCCAGTGAGGAACCCCCCTGTATATCTGATGCTTCAGAAAACCCCCCGGAGCCAGAAGCTAAGAAAGACggagtgtgtggGCCCCCGCCTTCAAAGAAGATGAAGCTGTTTGGTTTCAAAGAGGATCCCTTTGTGTTTCTGACTGAGGATGACCCTGTGTTCCCACCAATCCAGACGTTCTATAACCTGTCTTCAGACTTCCCAAAGCTGAATGTGCTGACTAGGACTCATGAAGGGAAGAAGAGGCATTTGTATATGGTGTCCAAGGAGCTACGCAATGTCCTCCTTAACAACAGTGAGAGGATGAAAGTCATCAACACAGGAGTGAAAGTGTGGTCGAGAAATAACGACGGGGAACAGTTTGGCTGCGCCTTCAGACTGGCCCAGGAGgGTATTTACACGCTCAATCCCTACATCAGAGCGCGCGTGATCAACATCAGTGTGGAGGATGTGAAGGTCCTCCTTACCGAGGAGAATCCTTTTCTCAGCAGGCTGGGAGAAGACGCTCACGCCCAGGCCAAGAAACTCGaaatggGCAGCATTGTTTTAAGATACCAACCAGATCTAAAGGACCCCGATGCTCCTCAGTGCCCCATTGAGCTTTGCGGTTGGAGGGGGAAGACCTCGATCAGAGCCTTCGTGCCTCGCAACGAGCGCCTCCACTATCTGCGCATGGTCGGTGTGGAGGTTTTTAAGGACAAGCAAGGCAAGAAGGAGGGAGGTGCGTCAGAAAGCCAAGAGGGAAACGCGGAGAACACAGAAGAACCGGGTCAGGAGGAGGACACTGCAGAGCAGGAGCAGTCAGACACAGAGCAGAATGGATCAGCACAATCAAAAACCAACAACTCTGAGGATGTGAGCAGCACTTGACATGTTAGTGGAGCGTTAGTGAAGCTTTAGCAAGACGGATCACTCCAGAGCCAGATTTGACCAACAGTGGAGAAAACGGAGGGAGAATACTAACGAAGCTTTAAGAAAGTTGCCTTTGCAATCATCCCCTTTTTTATAGAAAGTTCATGGACTAGCCTATTCTTCCCTAGATGGGGGAATTGGAacaataaaactaattttatttttagaaaggttttgttgttgttcttatTTTAAGTTTGGCTTGCTTTTACTGTATCTTTTGTTTGTGTAAGCAGTTGTTTCAGGAGATAACAAACGAAGGTGGCTAGGGATGGCTTCAGCTAATCCCTGCTTTCAGCCAAAGCTTATGCCAACCCGCtaaatgtacatttagcaaGCAAGTGCTAAAGAGGGCCTATggcctgctttttttttttatttcccctcAGATGGGATGTCAAGAATGCATTTAGTTTGACATATTAGTGTCTGACATGCTGTAAATACATCTTCCCATTTTATTAAAAGGTACCTAATAAAAAAGAATCGAAACTAAA

Function

symbol description
nsun2 Predicted to enable tRNA (cytosine-5-)-methyltransferase activity and tRNA binding activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human NSUN2 (NOP2/Sun RNA methyltransferase 2).

NR:

description
PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity molecular_function

KEGG:

id description
K15335 NSUN2, TRM4; tRNA (cytosine34-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231711.3 True 2974 mRNA 0.49 19 16599287 16633452

Neighbor

gene id symbol gene type direction distance location
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding upstream 344655 16229507 ~ 16254632 (+)
LOC103032568 NA coding upstream 739623 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 799054 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 846347 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 852242 15736537 ~ 15747045 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 62144 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 661439 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1301241 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1470364 18103816 ~ 18127521 (+)
LOC103029482 LOC103029482 coding downstream 2217075 18850527 ~ 18851285 (+)
G198053 NA non-coding upstream 33464 16547899 ~ 16565823 (+)
G198051 NA non-coding upstream 72647 16525827 ~ 16526640 (+)
G198050 NA non-coding upstream 73915 16524669 ~ 16525372 (+)
G198045 NA non-coding upstream 110238 16485029 ~ 16489049 (+)
G198043 NA non-coding upstream 133317 16450373 ~ 16465970 (+)
G198092 NA non-coding downstream 39628 16673080 ~ 16677784 (+)
G198163 NA non-coding downstream 513528 17146980 ~ 17147227 (+)
G198173 NA non-coding downstream 600424 17233876 ~ 17241559 (+)
G198172 NA non-coding downstream 625748 17259200 ~ 17264139 (+)
G198283 NA non-coding downstream 1483262 18116714 ~ 18117099 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 168753 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 205789 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 239619 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 269047 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 809433 15761923 ~ 15789854 (+)
G198344 NA other downstream 1751175 18384627 ~ 18385072 (+)
G198397 NA other downstream 2225080 18858532 ~ 18863366 (+)
G198400 NA other downstream 2254017 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 2470955 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 2532894 19166346 ~ 19182478 (+)

Expression


Co-expression Network