LOC103042292 (ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881)


Basic Information

Item Value
gene id LOC103042292
gene name ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16229507 ~ 16254632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231723.2
ACAGCTCTAGCTGCTGGTGGGAGGGAGGCCCTTCGTCTCAGAGCAAATGACGTGCAGGGGAGCAGCAGCAACGAGCAGgtgaaataaaaacacaccgCGGAGTGTCTCACAGTTAATCCAGAATGACTGAGAACGACGTGGAGAACGAGCTGTTAGACTATGAGGAGGATGAAGTAGATGCAGCAGGTGGCGTCGGGGATGGAACGCTTGCCGGTGACAGTGGTGCCATGACCATAAGAAAGGAGGGGGTCAAAGGCTCTTATGTGTCCATCCACTCCTCAGGGTTCAGGGACTTTCTTCTGAAGCCTGAGCTTCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCGTCTGAAGTCCAGCACGAGTGCATTCCTCAGGCCATTTTGGGAATGGATGTGTTATGCCAGGCTAAGTCTGGTATGGGGAAGACAGCTGTGTTCGTGTTGGCTACACTACAGCAGCTGGAGCCAGTGACTGGGCAGGTATCGGTACTGGTAATGTGTCATACCCGAGAGCTGGCGTTCCAGATCAGCAAAGAGTATGAGCGCTTCTCCAAGTACATGCCTGCTGTCAAGGTGGCAGTGTTCTTTGGTGGATTGTCTATAAAGAAGGATGAGGAGGTGTTGAAGAGAGAGAGCCCTCATGTGGTGGTGGGAACTCCTGGCCGTATCCTGGCCCTGTCCCGCAACAAGAGCCTTAACCTGCGACACATCAAACATTTCATCCTGGACGAGTGCGACAAGATGCTGGAACAACTTGACATGCGCCGTGACGTCCAGGAGATCTTCCGCATGACCCCTCACGAGAAGCAGGTCATGATGTTCAGTGCCACCCTGAGCAAAGAAATCCGCCCCGTCTGCCGAAAGTTCATGCAAGATCCGATGGAAATATTTGTGGATGACGAGACCAAGTTGACTCTGCATGGCCTGCAGCAGTATTACGTCAAGCTGAAGGACAACGAGAAGAACAGGAAACTCTTCGACCTGCTGGACGTGCTGGAGTTCAACCAGGTGGTGATCTTCGTGAAGTCGGTGCAGCGCTGCATTGCCCTCGCTCAGCTGCTGGTGGAGCAGAATTTTCCTGCCATCGCGATCCACAGAGCAATGCCCCAGGAGGAAAGGCTAGCTCGATATCAGCAGTTTAAGGATTTTCAGAGACGAATCCTTGTGGCCACTAACCTGTTCGGCAGAGGAATGGATATCGAAAGAGTCAACATTGCCTTCAACTACGACATGCCTGAGGATTCTGACACATACCTGCACAGGGTGGCGAGAGCAGGCCGGTTTGGGACGAAAGGTTTGGCCATAACGTTTGTGTCTGATGAAAACGATGCCCGTACACTGAATGATGTTCAGGACAGGTTTGAGGTGAACATCAGCGAGCTTCCAGAGGAGATTGACATATCATCCTACATCGAGCAGACGCGGTAAAGGAGATAAGCGGTGGTGAAGAAGAGGCGGGAGATGGTTCGGGAGAGCAGCTTTCAGTAGCTTTGCATTTCACATCGACTGACTGTTACAGTGAAGTTTAGCTGAGGACGTATAACTGATAGAAAGCTATAAACCCTGCGTTTAAAGGGTGCTTACATGCTTCTGATGTTGTTTGATgctttattattaatgactCTTGTTCATATCGAAgtgttaaaagtgaaagtatGTGTTTGTAAAAGATTATATTTACCTTTTTGAGAAGTGTTTCATTTCTaaatttgttctgtttttttttttttttcttgggcgTGTGCTACtgattctatttttattatggAAGTGGAAGAGTGGCttcatttcctctttttttttcgttttatttttgttgtgtttttttttttttttagtttttaagatTTTTGAATGTTTGGGTTGAGATACACTGATTCTGATTCAATcatataaatgaagaaatgcatACATGTAAAGTAGTTAAATACTACAGTGTTATAATTAGCTCTTGATAAAGGCATGTCTAAGTGATGGGAATGGGAAATATGAAGAAACGTAAGGTATGAAGTAGAAATGCTACAGTAATTAGTAATGTTCTGTATTTGTTGGAGGTCAGATACACTATGTTGTTGTTTGATGATTCACAGCAGTGTTTGTTCAGTAACTCTTTAAATGTACATGTTACTGTGTTGAAATGACAGTAGTACTGACACTATGCAttaaaggtgcattatgtaTTGCTTTATTTTCCGTTATGTACTTCCAAACCTCATCACAtggttacatttaaaaataagaaacactTATAACAAtagctctttttattttgtacattttttatttttacaaaagtcTTGACTGGCGTGACAACAAACGCACAACACTACAACATACgaattttaacttattttgagtTTACAACACTTTCAGTCTGCACTGAAAGGAAATATAAAAAACCCATTTATTttcacataatgcacctttaaGACTTTTGGTATCTGTAGTTCTCAAGCCGTTTTCCAGTATTCAGAAACTATGACTGAATTTCATAAATAAATCCGAAACTAAAACTCTG

Function

symbol description
ddx39b Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human DDX39B (DExD-box helicase 39B).

NR:

description
spliceosome RNA helicase DDX39B

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12812 DDX39B, UAP56, SUB2; ATP-dependent RNA helicase UAP56/SUB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231723.2 True 2523 mRNA 0.44 11 16229507 16254632

Neighbor

gene id symbol gene type direction distance location
LOC103032568 NA coding upstream 369843 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 429274 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 476567 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 482462 15736537 ~ 15747045 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding upstream 520056 15699725 ~ 15709451 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 344655 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 440964 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 1040259 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1680061 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1849184 18103816 ~ 18127521 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding upstream 1289 16226567 ~ 16228218 (+)
G197880 NA non-coding upstream 30021 16188912 ~ 16199486 (+)
G197881 NA non-coding upstream 81397 16146485 ~ 16148110 (+)
G197879 NA non-coding upstream 83434 16145511 ~ 16146073 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding upstream 386750 15821478 ~ 15842757 (+)
G197924 NA non-coding downstream 85058 16339690 ~ 16341355 (+)
G197925 NA non-coding downstream 89032 16343664 ~ 16343913 (+)
G198043 NA non-coding downstream 195741 16450373 ~ 16465970 (+)
G198045 NA non-coding downstream 230397 16485029 ~ 16489049 (+)
G198050 NA non-coding downstream 270037 16524669 ~ 16525372 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 439653 15761923 ~ 15789854 (+)
G197665 NA other upstream 1432779 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1760625 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1936439 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2866849 13324386 ~ 13362658 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 67310 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 90485 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 134176 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 169985 16424617 ~ 16430534 (+)
G198344 NA other downstream 2129995 18384627 ~ 18385072 (+)

Expression


Co-expression Network