zfand2a (zfand2a,LOC107568938)


Basic Information

Item Value
gene id zfand2a
gene name zfand2a,LOC107568938
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36566207 ~ 36580371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232066.2
GCTTCATGGCGCTCTGATGACATCGGAGAAAAACAGGCTCTATAAATCCGGCCGCTCTCAGTCCACAGAGTTTTCCCAGTTTATTGGAGACAAACAGAGATAGAGGGACCAAACTCAGCGCAGCTCAATCCCTGAACGACACACTTCACCACAGTGCCATGGAGTTTCCAGACCTAGGGGAGCATTGCTCAGAGAAGTCCTGCAAGCAGCTGGATTTTCTGCCGATGAGATGTGATGCTTGTGAAGAAATTTTCTGCAAAGACCACATTACTTATGCAAGTCACAAGTGTACTTCCTCATATAAAAAGGATGTCCAGGTCCCAGTATGTCCACTGTGTAACACCCCCATTCCAATTAAAAGAGGGGAAATGCCTGATATCAAAGTTGGGGAACATATAGACCGTGACTGCAAATCAGATCCTGCACAGAGGAAAAGAAAGATTTTTACAAACAAGTGTTCAAAGGGAGGCTGTAAGCAGAAGGAGATGATCCGTGTGACGTGTGACCAGTGCCACTTGAACTACTGTCTCAAACACAGACATCCTCTAGACCATGACTGTAAGACTGACAGTAAACCAGTCTCCAAGTCTGGGTAA
>XM_022683388.1
GCTTCATGGCGCTCTGATGACATCGGAGAAAAACAGGCTCTATAAATCCGGCCGCTCTCAGTCCACAGAGTTTTCCCAGTTTATTGGAGACAAACAGAGATAGAGGGACCAAACTCAGCGCAGCTCAATCCCTGAACGACACACTTCACCACAGTGCCATGGAGTTTCCAGACCTAGGGGAGCATTGCTCAGAGAAGTCCTGCAAGCAGCTGGATTTTCTGCCGATGAGATGTGATGCTTGTGAAGAAATTTTCTGCAAAGACCACATTACTTATGCAAGTCACAAGTGTACTTCCTCATATAAAAAGGATGTCCAGGTCCCAGTATGTCCACTGTGTAACACCCCCATTCCAATTAAAAGAGGGGAAATGCCTGATATCAAAGTTGGGGAACATATAGACCGTGACTGCAAATCAGATCCTGCACAGAGGAAAAGAAAGATTTTTACAAACAAGTGTTCAAAGGGAGGCTGTAAGCAGAAGGAGATGATCCGTGTGACGTGTGACCAGTGCCACTTGAACTACTGTCTCAAACACAGACATCCTCTAGACCATGACTGTAAGACTGACAGTAAACCAGTCTCCAAGTCTGGAAATGCTGCTTTAATGAGAGCTCATGGTGCTTGCAGCAGTAACACTGCAGCCTCATCCAGTCGAGCGAGCTCCAGAAGTGTCTCTAATGGACTGGGTGGGAATGCCCGCCCTCAGAGCACTAGTGCACAGAGGACCTCAGCTCCAGCTTCCATGGCTCCACCTCCAGCACAGAATGTAATACCTCCATCAGCGTCCTTTCAGGCTGGACTGACGGAGGAGCAGGCTCTCCAGCGGGCGTTAGAGATGTCACTGGCAGAATCGGCGCGGACCACCCAGCCATCCCTCAGTCCTCAGGAGCAGGAGGATCTGGCCCTGGCTCAGGCCCTCGCTGCTAGTGAGGAAGAGTACCGacggcagcagcagagacaacaGGGGAGGGATTCCAAGCAGTCCAACTGCCTCTTGTCTTAACATCAGATCCTACTGAACCAGTGCAATCTGCCTCAATCTGCACAAACAGCATCTGAACCAGTTATCTGAACACACTGATCCTCAGTGCAACATGGAAATTCCTGAATCACTGAATGAACACAGCTGAGAACTTTTAGATTCTACTCTTTTTGTGCTTCTTATATATAAACGGACGGgaaatgctgctgtttttcagGGGCgtgtaatatgtaaatattttatatagtgatCATGTTCATCCATAATTAAATGTAGATGTTTCTgagaataaattattttaatcaaatttaaa
>XM_022683389.1
GCTTCATGGCGCTCTGATGACATCGGAGAAAAACAGGCTCTATAAATCCGGCCGCTCTCAGTCCACAGAGTTTTCCCAGTTTATTGGAGACAAACAGAGATAGAGGGACCAAACTCAGCGCAGCTCAATCCCTGAACGACACACTTCACCACAGTGCCATGGAGTTTCCAGACCTAGGGGAGCATTGCTCAGAGAAGTCCTGCAAGCAGCTGGATTTTCTGCCGATGAGATGTGATGCTTGTGAAGAAATTTTCTGCAAAGACCACATTACTTATGCAAGTCACAAGTGTACTTCCTCATATAAAAAGGATGTCCAGGTCCCAGTATGTCCACTGTGTAACACCCCCATTCCAATTAAAAGAGGGGAAATGCCTGATATCAAAGTTGGGGAACATATAGACCGTGACTGCAAATCAGATCCTGCACAGAGGAAAAGAAAGATTTTTACAAACAAGTGTTCAAAGGGAGGCTGTAAGCAGAAGGAGATGATCCGTGTGACGTGTGACCAGTGCCACTTGAACTACTGTCTCAAACACAGACATCCTCTAGACCATGACTGTAAGACTGACAGTAAACCAGTCTCCAAGTCTGGAAATGCTGCTTTAATGAGAGCTCATGGTGCTTGCAGCAGTAACACTGCAGCCTCATCCAGTCGAGCGAGCTCCAGAAGTGTCTCTAATGGACTGGGTGGGAATGCCCGCCCTCAGAGCACTAGTGCACAGAGGACCTCAGCTCCAGCTTCCATGGCTCCACCTCCAGCACAGAATGTAATACCTCCATCAGCGTCCTTTCAGGCTGGACTGACGGAGGAGCAGGCTCTCCAGCGGGCGTTAGAGATGTCACTGGCAGAATCGGCGCGGACCACCCAGCCATCCCTCAGTCCTCAGGAGCAGGAGGATCTGGCCCTGGCTCAGGCCCTCGCTGCTAGTGAGGAAGAGTACCGacggcagcagcagagacaacaGGTATCCAGAACCCTTAGCAGTCAGTAgcatgctatgctatgctatatgCTAGCAGGACGCCGATTAGGGGAGGGATTCCAAGCAGTCCAACTGCCTCTTGTCTTAACATCAGATCCTACTGAACCAGTGCAATCTGCCTCAATCTGCACAAACAGCATCTGAACCAGTTATCTGAACACACTGATCCTCAGTGCAACATGGAAATTCCTGAATCACTGAATGAACACAGCTGAGAACTTTTAGATTCTACTCTTTTTGTGCTTCTTATATATAAACGGACGGgaaatgctgctgtttttcagGGGCgtgtaatatgtaaatattttatatagtgatCATGTTCATCCATAATTAAATGTAGATGTTTCTgagaataaattattttaatcaaatttaaa

Function

symbol description
zfand2a Predicted to enable zinc ion binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein targeting to ER. Predicted to be active in endoplasmic reticulum. Orthologous to several human genes including ZFAND2B (zinc finger AN1-type containing 2B).

NR:

description
AN1-type zinc finger protein 2A-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24685 ZFAND2; AN1-type zinc finger protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232066.2 False 596 mRNA 0.46 5 36566207 36573094
XM_022683388.1 False 1296 mRNA 0.47 10 36566207 36580371
XM_022683389.1 True 1363 mRNA 0.47 10 36566207 36580371

Neighbor

gene id symbol gene type direction distance location
mrm2 mrm2 coding upstream 747621 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 767207 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 950396 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 1180122 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 1193606 35356753 ~ 35372601 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 71463 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 297452 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 371536 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 430324 37010695 ~ 37025525 (+)
nsmce1 nsmce1 coding downstream 507830 37088201 ~ 37096868 (+)
G202311 NA non-coding upstream 50279 36515648 ~ 36515928 (+)
G202307 NA non-coding upstream 95958 36409580 ~ 36470249 (+)
G202269 NA non-coding upstream 236511 36196592 ~ 36329696 (+)
G202268 NA non-coding upstream 303936 36158978 ~ 36262271 (+)
G202270 NA non-coding upstream 319564 36243616 ~ 36246643 (+)
G202341 NA non-coding downstream 91620 36671991 ~ 36672416 (+)
LOC111195542 NA non-coding downstream 300989 36881360 ~ 36914738 (+)
G202394 NA non-coding downstream 450852 37031223 ~ 37032350 (+)
G202400 NA non-coding downstream 457017 37037388 ~ 37037645 (+)
G202405 NA non-coding downstream 479147 37059518 ~ 37060161 (+)
LOC111195488 NA other upstream 1441589 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 2751221 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 3291300 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 3588297 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 3638288 32923528 ~ 32927919 (+)
G202336 NA other downstream 9077 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 402952 36983323 ~ 36993332 (+)

Expression


Co-expression Network