LOC103040671 (galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387)


Basic Information

Item Value
gene id LOC103040671
gene name galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36651834 ~ 36677922 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232068.3
acacactcacacacacacacagccagggaGAAGCAGAATAGCAATGAGACAGGAGAAGAGCAGGGAAGGCTGCTGAAGTATTGAGCGCAGAATTCTCCCGCATCCAAAGAGTGGAATACCAGGACACCAGCATGACAACGAAGATGACCAATGGATACTTAGTTTTGGTGCATCCCATTGCTTAGCTTGATCGATTTCTGACGCTGAAGAAAATACTCCACTGTTGAAAGCCACACCTGACGTCAAAGCGCCAACACACAATGTCCGAGCATGAAGATCTGTCCAAAACCGTGGGCCACTGGAACTCCTCAGAGAGCTACCAGCTGAACCCGGCCAGCGTGATCGTGTCCGTGGTGTTCTCGCTCATTTTCCTGCTGGGCACGGTGGGCAACAGCCTGGTGCTGGCCGTGCTCCTGCGCAGCGGCCAGGTGGGTTACAACACCACCAACCTGTTCATCCTCAACCTCAGCGTGGCCGacttcttcttcatcatcttctGCGTGCCTTTCCAAGCCACCATCTACTCGCTGGAAGGCTGGGTGTTCGGCTCCTTCATGTGCAAGGTGGTGCACTTCTTCATCAACCTCACCATGTACGCCAGCAGCTTCACGCTCGCCGCCGTCTCTGTGGACCGGTATTTGGCCATCCGGTATCCCCTGCGATCCAGAGAGTTACGAACACCCTGCAACGCTGTCGTCGCCATGGTCATCATTTGGggtctttctctcattttcgcTGGCCCCTACTTGAGCTACTACGACCTCATCGACTTCGAGAACAGCAACGTATGTGTTCCCGGTTGGGAGGAGCACAACCGCAAGGTGTTGGACACCTGCACCTTTGTGTTCGGCTACGTCATCCCCGTGCTCATCGTCAGCCTGTCCTACACTCGCACCATCAAGTACCTGTGGACAGCCGTGGACCCGCTGGACGTCATGTCCGAGTCCAAGCGCGCCAAACGCAAAGTCACCAAGATGATCATCATCGTCACTGTGCTCTTCTGCATCTGCTGGCTGCCCTACCATGTGGTCATCCTCTGCTACCTCTATGGAGACTTCCCCTTCAACCAGACCACCTACGCGTTCCGCCTGCTGTCGCACTGCATGGCCTACGCCAACTCCTGCCTCAACCCCATCGTCTACGCCCTGGTCTCCAAGCACTTCCGCAAGGGATTCAAGAAGGTCTTCAGCTGCATCCTCAGCAAAAAAGGCCGCAACAAGGTGCATGTGGTACACGTGGCCAACACCGTACCTGGCTTTGAGGGTGGTTCCACCGAAGTATCCCACATGAACGAGGAGAACGGCAGGCAAAACGAGCGAGAGATGGTCAACCGCCCACACGCCGAACCACAGGACCCTACAATGGACATAACGTTACCCTTCCAGAACCAGCCATAAGCATGCAGAGGACAGCTGATGGTGCTAAACAGAAAGCCTTactgaacttaaaaaaaaaaccaacagaCCGCAACAACTGGACAACTAGAGAACTAGACCTGATCGGGGTCTTGCATTGACCACTGGTCAAAGACAATGAATGGTTACCTCAACTGACATACTGATGGACAAGATAcggacaatatatttttatgtatgaatattattatgatttattatgaTTACTGTGAGTAATTACGTTGCTTTGAGTTGTTTTTGTGAGATAATGATGTTTACATGCTTATGTTCAAAATGTGTTGTGTTATTTAAAATCTGGACAGTATCCATTCTAACCAATGGCTGCATATAAGCATGGACGACGTGGTTCAAGTCAAAAAAAAAGCCACCACAGacctgcacagtagagaccagaggggGAGCTAGATCTAGGGACTTGCCTACTCACATGGTTGTCTCGTTACTAATTTCTTCTCCCAGACCAAACATATTGAAAACCACTTGAAGCAGACTTTTCCACTGGATACCCAGTGtgccatttacatttacaccaaGTTACATTACCAGAGCTCAGCTCTGTCGATTCCTGTTTGCTGCTGAAGCtattagcaacaaaaaaaaagggaaaattaatattttaaatagtatttGGACTCATTCTAGACCAGAAAACAGGATAGCTGGCCAAGACCAAGCACAAATGCTAACAATCCAGCACATCTAACTACACTAACATTGGCTGACTAGCTAACAATGAATTAGATTACACAGTATTACTTTACTTGGatgaaactgaactgaactgaacttttAGCTAAATGTAAATGAGTCTTAATAgaatataaccctacacctaagactaatcctaaccttaacctaaaccctGAATTAAACCAAATAAGCACACCCTAAACCTAACATTAGCCTGAACTTTATATATAACCCTTAACCTAATTCTTAAAGGTTAGGGTATAGAGTGCACTTAATAGAGAAtaattttttaactaaaaattcAGTAGCATTTAATCTAcagttagttgaatgttagttaagcTTCTACGAGGCCACGCCTACTTACGATGTAGCAGAATAaggggtcccactttataatgtaatataagtgtctctaataactttGTAGTTAGTAgtacattaaccctttcagacccgaATTATCCAATGATAATTCCATCCAGTGATGGGAAAAAAATTTAAGAAT

Function

symbol description
galr2b Enables galanin receptor activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway and neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and spinal cord. Orthologous to human GALR2 (galanin receptor 2).

NR:

description
galanin receptor type 2-like

GO: NA

KEGG:

id description
K04231 GALR2; galanin receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232068.3 True 2613 mRNA 0.46 4 36651834 36677922

Neighbor

gene id symbol gene type direction distance location
zfand2a zfand2a,LOC107568938 coding upstream 71463 36566207 ~ 36580371 (+)
mrm2 mrm2 coding upstream 833248 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 852834 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 1036023 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 1265749 35377651 ~ 35386085 (+)
trnat-cgu_1 NA coding downstream 199901 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 273985 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 332773 37010695 ~ 37025525 (+)
nsmce1 nsmce1 coding downstream 410279 37088201 ~ 37096868 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 1329599 38007521 ~ 38058413 (+)
G202311 NA non-coding upstream 135906 36515648 ~ 36515928 (+)
G202307 NA non-coding upstream 181585 36409580 ~ 36470249 (+)
G202269 NA non-coding upstream 322138 36196592 ~ 36329696 (+)
G202268 NA non-coding upstream 389563 36158978 ~ 36262271 (+)
LOC111195542 NA non-coding downstream 203438 36881360 ~ 36914738 (+)
G202394 NA non-coding downstream 353301 37031223 ~ 37032350 (+)
G202400 NA non-coding downstream 359466 37037388 ~ 37037645 (+)
G202405 NA non-coding downstream 381596 37059518 ~ 37060161 (+)
G202406 NA non-coding downstream 383333 37061255 ~ 37063186 (+)
LOC111195488 NA other upstream 1527216 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 2836848 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 3376927 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 3673924 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 3723915 32923528 ~ 32927919 (+)
LOC103041887 NA other downstream 305401 36983323 ~ 36993332 (+)

Expression


Co-expression Network