zc3h7a (zc3h7a)


Basic Information

Item Value
gene id zc3h7a
gene name zc3h7a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36951907 ~ 36973852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232070.3
AGCGGCGGACCAAACCACCCCGGCAGCGCGAGACGTCACACGCACCGGGGCGCGAGGGCTAGCGTTTAGCTTCACCAGGTAACCGGGCCGGAACCGAGATTACCCGCTGCGGGGGGTTTATGAGAAGGTTTGGTCTGCAGTCCGTGGTGTGCATGGGAGCATGTCGAGCGTGGGTCAGGACAGAAGCAGCCGATGGCAAGAGATCGAGAAAGGGCTGCAGTTCATCCAGTCCACCCTGCCGTTCCCTGGTAGTCAAGAACAGTATGAGATATTTATCCAGGACCTGGTGAGGAATCTGTTCGGGGAGGGAAATGATGTGTTTCATGAGGGTGAATGGGCACGTTCAGTCGAGCTGTACACAGAGGCCTTAAACATAGCAGAGTATGCAGGTTCAGAAGATATCCTCATAGCTTGTGAGCTGAGGGAGAAGCTCCATGCCAATCGTGCTGCATCGTACTTAAACATTGGTCTGCATGACCAAGCACTGGTGGACTGTGAAAAAGCACTTCAGCTTAATGACAAAAACCACAGAGCGCTCTATCGGAAGGCCAGGTCCCTGAAGGAGATGGGAAGGCATCAAGACGCCTATGAGGCTGTAGCCAAGTGCTCCATGGCAGCGCCTCAGgATACAAATGTGATTCAGTTGACTCAGGAGCTTGCCAAAATGTTGGGCCTGAAGATTCGTAAAGCCTATGTCAGGGGAAAGCCTGCCTTAAATGTGTTGTCTGGCTCAAGTATTTCCGGAGCAGCAAATGAAAAGCAGTCACAGACCTCTGCTTCTGTGGAAGATATTGAAACAGATGCCTGCCACTCTAACCAGGCTATTGCTTCTTCAATGCCTGTAAGCATGCCACTGTGCCCTCCTGTGAGTGAGAAAGTAGAAGTGGAGCCTCCGCCTGCCCCTGTCAATATTATGCCCCCTGTACCCCCTATTGAGCCACATAACCCTGAGCCCAATCCAATGTCCGTGCATATGCCTTTGGTTAATGGCTCAAGACCTAGTGAGTCCTATGCAGTTCCAGAGCCACAGTTGGATTTTGATGCAGAGATTATTGGGGATGATCTGGATGAGTTACTTGATGCAGCTCCTGCTGATCCCTCTGTGGTCATTCCTACAGTGAAAGGTCCCCTTCCTTTACCTACCAGTATTGCCAGTGTAAGTTCCATGTCTGCATCTCTTCATTTACCCCCCCTGCTGAGCCATCCAATGCTAGTGGCAACCCAGTGCACTGTGAATCTCCCAGCACCCTACAACAAACCAGTATCGTCAAGCTACTCCCTCGGCCTGGATACGTTCGCTTCTCCGCTGGATTCGCTGGATAGCTTGTCTATTTCAGAACCTCagtcagGTTTTGGCCAGCATACATTTATGATTGGAAGCAATGAAATAACCTTACCCCCCATGCCACCCATGGGGATGCCTTTCGGTATGCCGGAGAGCAGCAGTTATGCCCAGGAGCTTCCACCACAAGTGGACTTGGCCAAGAATCCACTCGCCGACACTCATGAGTTTAAACAAGCCTGCTCTACATGCTTCAGAACTGGGCCTGGAGTTCTTGATTTTTCCTATCATCCAGAGGaccataaatgtaaaaaggACTTGTTGCTTGGAAGACTCAAACATTCAGATAACCTTACATGGAAACTGATTCGTCCTAGGCCAACCAAAAACCAGTATGTGGGGCCGTATTATATTTGCAAAGATGTAGCCAATGGAGAAGAGTGTAAGTACCGTGGTCACTGCACTTTTGCCTATTGCCAAGAAGAGATTGATGTCTGGACTCTGGAGCGCAAAGGCTTCATCTCTAGAGACCTGCTGTGTGATCCGTATGGGGCTAGGATGAAGGTCACTTTGTCGGTCCCCAAAATCCTACAGGAGCACCAAGGGATATTTATGTTCCTTTGTCAGGTGTGCTTTGATCACAAACCCAGAATAATCAGCAAACTCAATAAGGACAACCCAGCTGTCTGCTCTCATCCAGTGACAAAGCATGTGTTTGAAGAACACAAGTGCCTGGTGCATGTTTTGAAGGATGTCACCCTAAGCTACTCCAAAATTCGCCCATACTTTCCAACCTGTCAGTTAGACCTGTGTAGGCATGCGGTACGGTATGGCTGCCAGAGAGAGGACTACTGTTTCTACGCCCACAGCCTCATCGAGCTCAAAGTGTGGGTGATGCAGCGTGAACAAGgcATTACCCATGAAAGTATTGTCCAGGAGGCAAAGAAGTTTTGGAATATTGAGTCCAACTCTCAAGTACAGGAGCTGCAGCTCTCCTTAAAGAAGTTCGGTCCTTCCAATCTTAAGATGCagtttgtgtgtgagcagtgcTGGAGGAACGGTCAGGTCAGCGAGCCTGACAAGAACAGGAAGTACTGCAGTGCTAAGGCCAGGCACATATGGTCCAAAGACCGGCAGGTGGTGCTGGTTAGCTCCATTGAAAGAAGGAAGTGGATACAGATGCGTTCTCTCCCAATCAGAAAGCCTGCACCTTCTCAATTTGAGATTTGCATGCATGTGGCTGCTGGCAAGAAGTGCCAGTACATTGGGAACTGTACCTTTGCCCACAGTCCAGAAGAAAAAGATCTCTGGACGTACATGAAAGATAACAATAttgcaGACATGGGGCAGCTTTATGAGCTGTGGCTGCAGTCTCAGAAGCCAAGCTGCTCTGCTGAGGGCTCGAGCAGTTCTACCAAGGAGAATGGCAAGCAGATTCACTTACCCACAGACTACGCAGAGGAAATTGCTGGTAATCACTGCTGGCTGTGTGGGAAGAACTGCAACAGCGAgaagcagtggcagcagcacatcACTTCAGAGAAGCACAAGGACCGCGTGTTCAACTCTGAGGACGACCTGAACTGCTGGCAGTATCGCTTCCCAACAGGAACCTTCAAAGTCTGCGAGCGGTTCCGGATCGGTACATGCACCGAGGAGGAGCTCTGTAAACTGGCCCACGGAGAGGAGGAGCTGAAGGAGTGGCAGGACCGGAGAGAATTCCTATTGCAGAGACTTGCCAAAGCACGGAATGATCACTTGCTAGCACCAAATGATAACGACTTTGGCAAATATAGTTTTCTGCTTAAagatttaaagtaattttttattaatttggcGAATCTTCACAAGGTGTTcagagcaaaaataaaatttggATTACAGTATTGAAGCAGATGAGCACGTGTGATGCTCCTTGCAGTTAAAGAGAGGGGAAGAGCCCCCTCgagctctttctctgtttgaATTTAATGGAAAGCACAGAGCTGGCCTTGTGTTCTATGTAATCATGGCTTTGTTGCTTTCAtcacagagggagaaaacaaaaCGCACTATTGCCTTTTATGTTTAAGTTCCTTAGGTGTTGCACGATGGACTGCTTTTTACGAAATTTGCAGATTATGATCAGGCCGAGAACACCAAAGAAGTAGTCTGGAGCCCTATTTGGACTGGATTAGTTTTACCAGGGGAGGTGGGATAGTGTACTTTTACTACAGGAAGGCAGGGAAAGatgaatgatgaatgaatgaTTTGTAAAGGATTAGAAATCTGGGTATAAACAAGAGATGGGAGTGGCTTCTCCATTTATGCACAACCgttaaaaagtaattacagCTCCATGTTTAACACGCATGACTTGTAATGACACAGACTTGTCTAGTTGCACAAGCTGCACATCTTTGGTTTGTCTTCTGGATTTAAGTGCTAGATTTCTTAAACTTCAAACCCAGGGTATCTGTGTAATGCATGACTAAACTAAACACCCCCTCAAGCACCTCTGTACTTGAGAAAAGCTGCCAAAACTCATAATCtacagtattttatagaatatttaGCTAAATGTGATTGATCTGCATGTCTTTACTGACGCAGGAGTTCACAGTCTGAGATAACGACTGATGATACATTCATACTAGACTAAAATCACTGGCAAACTCTGGTAATAATTACATAACCCCTCCtccccataaaaaaaaaatctcatccTAATAGGGCTCAAGAAGTATAAACATGATTGGGCAAAACTGACGGAGTCTGTGAGTTTGAGATATGgttgattttctttctttctttttccactTAACGTAATTTtcagtttttgtctttttgttttcctttataATTGGAATTTGGGGTCCTATTAATTGGTTTTATTTCATGGaggtatgtttattttataatttcacTGTTGTATCTGTTGAATTACAATGTATGTTTTAGACAGATTATACAAATCTACCAAATACCCACAGAATTATTCATTTTCTATCACGGATGCAGAGAAACAGGACATGCACAAGCtgaaatgcaaacaaaacaaagcatGAAGAAGCAAATAACTGACATGATGGCACTCAGTATGATCAACTGTAGTTTTAATGGTTTTCTAATTGGTTTCTTCAGTATCCAGGCAGCTGTTCCATCTTGCCTCCTGTGTTCCTGTTCTGGCCTCGGCGTGACCggttccctttttttttttacagtcctttttGATTTAATGTTAAAGAACAGTCGTATAAGAAAAGCAGTTCAGAGCAGTCCTGTTTGTTGGTCTAACCTGTCTGGACATCAGTGCCATTAAACGTTTGTATTCGTATTAGGTATTATTGAAATTCAGTGGCGGACTCTTTATTAAAGGGCTGGAAGGTCATAAGGCTAGAATAAACCATAATGTACTGCACTTTCTTTATTGTGTTGAACATTGGAATGAAACATTACATAAAGAAATGGTTATATAGGGATTAATGTATCTAATATTGCATACCTGTagaataaagtgtattttgctTCTTT
>XM_015600976.2
AGCGGCGGACCAAACCACCCCGGCAGCGCGAGACGTCACACGCACCGGGGCGCGAGGGCTAGCGTTTAGCTTCACCAGGTAACCGGGCCGGAACCGAGATTACCCGCTGCGGGGGGTTTATGAGAAGGTTTGGTCTGCAGTCCGTGGTGTGCATGGGAGCATGTCGAGCGTGGGTCAGGACAGAAGCAGCCGATGGCAAGAGATCGAGAAAGGGCTGCAGTTCATCCAGTCCACCCTGCCGTTCCCTGGTAGTCAAGAACAGTATGAGATATTTATCCAGGACCTGGTGAGGAATCTGTTCGGGGAGGGAAATGATGTGTTTCATGAGGGTGAATGGGCACGTTCAGTCGAGCTGTACACAGAGGCCTTAAACATAGCAGAGTATGCAGGTTCAGAAGATATCCTCATAGCTTGTGAGCTGAGGGAGAAGCTCCATGCCAATCGTGCTGCATCGTACTTAAACATTGGTCTGCATGACCAAGCACTGGTGGACTGTGAAAAAGCACTTCAGCTTAATGACAAAAACCACAGAGCGCTCTATCGGAAGGCCAGGTCCCTGAAGGAGATGGGAAGGCATCAAGACGCCTATGAGGCTGTAGCCAAGTGCTCCATGGCAGCGCCTCAGgATACAAATGTGATTCAGTTGACTCAGGAGCTTGCCAAAATGTTGGGCCTGAAGATTCGTAAAGCCTATGTCAGGGGAAAGCCTGCCTTAAATGTGTTGTCTGGCTCAAGTATTTCCGGAGCAGCAAATGAAAAGTCACAGACCTCTGCTTCTGTGGAAGATATTGAAACAGATGCCTGCCACTCTAACCAGGCTATTGCTTCTTCAATGCCTGTAAGCATGCCACTGTGCCCTCCTGTGAGTGAGAAAGTAGAAGTGGAGCCTCCGCCTGCCCCTGTCAATATTATGCCCCCTGTACCCCCTATTGAGCCACATAACCCTGAGCCCAATCCAATGTCCGTGCATATGCCTTTGGTTAATGGCTCAAGACCTAGTGAGTCCTATGCAGTTCCAGAGCCACAGTTGGATTTTGATGCAGAGATTATTGGGGATGATCTGGATGAGTTACTTGATGCAGCTCCTGCTGATCCCTCTGTGGTCATTCCTACAGTGAAAGGTCCCCTTCCTTTACCTACCAGTATTGCCAGTGTAAGTTCCATGTCTGCATCTCTTCATTTACCCCCCCTGCTGAGCCATCCAATGCTAGTGGCAACCCAGTGCACTGTGAATCTCCCAGCACCCTACAACAAACCAGTATCGTCAAGCTACTCCCTCGGCCTGGATACGTTCGCTTCTCCGCTGGATTCGCTGGATAGCTTGTCTATTTCAGAACCTCagtcagGTTTTGGCCAGCATACATTTATGATTGGAAGCAATGAAATAACCTTACCCCCCATGCCACCCATGGGGATGCCTTTCGGTATGCCGGAGAGCAGCAGTTATGCCCAGGAGCTTCCACCACAAGTGGACTTGGCCAAGAATCCACTCGCCGACACTCATGAGTTTAAACAAGCCTGCTCTACATGCTTCAGAACTGGGCCTGGAGTTCTTGATTTTTCCTATCATCCAGAGGaccataaatgtaaaaaggACTTGTTGCTTGGAAGACTCAAACATTCAGATAACCTTACATGGAAACTGATTCGTCCTAGGCCAACCAAAAACCAGTATGTGGGGCCGTATTATATTTGCAAAGATGTAGCCAATGGAGAAGAGTGTAAGTACCGTGGTCACTGCACTTTTGCCTATTGCCAAGAAGAGATTGATGTCTGGACTCTGGAGCGCAAAGGCTTCATCTCTAGAGACCTGCTGTGTGATCCGTATGGGGCTAGGATGAAGGTCACTTTGTCGGTCCCCAAAATCCTACAGGAGCACCAAGGGATATTTATGTTCCTTTGTCAGGTGTGCTTTGATCACAAACCCAGAATAATCAGCAAACTCAATAAGGACAACCCAGCTGTCTGCTCTCATCCAGTGACAAAGCATGTGTTTGAAGAACACAAGTGCCTGGTGCATGTTTTGAAGGATGTCACCCTAAGCTACTCCAAAATTCGCCCATACTTTCCAACCTGTCAGTTAGACCTGTGTAGGCATGCGGTACGGTATGGCTGCCAGAGAGAGGACTACTGTTTCTACGCCCACAGCCTCATCGAGCTCAAAGTGTGGGTGATGCAGCGTGAACAAGgcATTACCCATGAAAGTATTGTCCAGGAGGCAAAGAAGTTTTGGAATATTGAGTCCAACTCTCAAGTACAGGAGCTGCAGCTCTCCTTAAAGAAGTTCGGTCCTTCCAATCTTAAGATGCagtttgtgtgtgagcagtgcTGGAGGAACGGTCAGGTCAGCGAGCCTGACAAGAACAGGAAGTACTGCAGTGCTAAGGCCAGGCACATATGGTCCAAAGACCGGCAGGTGGTGCTGGTTAGCTCCATTGAAAGAAGGAAGTGGATACAGATGCGTTCTCTCCCAATCAGAAAGCCTGCACCTTCTCAATTTGAGATTTGCATGCATGTGGCTGCTGGCAAGAAGTGCCAGTACATTGGGAACTGTACCTTTGCCCACAGTCCAGAAGAAAAAGATCTCTGGACGTACATGAAAGATAACAATAttgcaGACATGGGGCAGCTTTATGAGCTGTGGCTGCAGTCTCAGAAGCCAAGCTGCTCTGCTGAGGGCTCGAGCAGTTCTACCAAGGAGAATGGCAAGCAGATTCACTTACCCACAGACTACGCAGAGGAAATTGCTGGTAATCACTGCTGGCTGTGTGGGAAGAACTGCAACAGCGAgaagcagtggcagcagcacatcACTTCAGAGAAGCACAAGGACCGCGTGTTCAACTCTGAGGACGACCTGAACTGCTGGCAGTATCGCTTCCCAACAGGAACCTTCAAAGTCTGCGAGCGGTTCCGGATCGGTACATGCACCGAGGAGGAGCTCTGTAAACTGGCCCACGGAGAGGAGGAGCTGAAGGAGTGGCAGGACCGGAGAGAATTCCTATTGCAGAGACTTGCCAAAGCACGGAATGATCACTTGCTAGCACCAAATGATAACGACTTTGGCAAATATAGTTTTCTGCTTAAagatttaaagtaattttttattaatttggcGAATCTTCACAAGGTGTTcagagcaaaaataaaatttggATTACAGTATTGAAGCAGATGAGCACGTGTGATGCTCCTTGCAGTTAAAGAGAGGGGAAGAGCCCCCTCgagctctttctctgtttgaATTTAATGGAAAGCACAGAGCTGGCCTTGTGTTCTATGTAATCATGGCTTTGTTGCTTTCAtcacagagggagaaaacaaaaCGCACTATTGCCTTTTATGTTTAAGTTCCTTAGGTGTTGCACGATGGACTGCTTTTTACGAAATTTGCAGATTATGATCAGGCCGAGAACACCAAAGAAGTAGTCTGGAGCCCTATTTGGACTGGATTAGTTTTACCAGGGGAGGTGGGATAGTGTACTTTTACTACAGGAAGGCAGGGAAAGatgaatgatgaatgaatgaTTTGTAAAGGATTAGAAATCTGGGTATAAACAAGAGATGGGAGTGGCTTCTCCATTTATGCACAACCgttaaaaagtaattacagCTCCATGTTTAACACGCATGACTTGTAATGACACAGACTTGTCTAGTTGCACAAGCTGCACATCTTTGGTTTGTCTTCTGGATTTAAGTGCTAGATTTCTTAAACTTCAAACCCAGGGTATCTGTGTAATGCATGACTAAACTAAACACCCCCTCAAGCACCTCTGTACTTGAGAAAAGCTGCCAAAACTCATAATCtacagtattttatagaatatttaGCTAAATGTGATTGATCTGCATGTCTTTACTGACGCAGGAGTTCACAGTCTGAGATAACGACTGATGATACATTCATACTAGACTAAAATCACTGGCAAACTCTGGTAATAATTACATAACCCCTCCtccccataaaaaaaaaatctcatccTAATAGGGCTCAAGAAGTATAAACATGATTGGGCAAAACTGACGGAGTCTGTGAGTTTGAGATATGgttgattttctttctttctttttccactTAACGTAATTTtcagtttttgtctttttgttttcctttataATTGGAATTTGGGGTCCTATTAATTGGTTTTATTTCATGGaggtatgtttattttataatttcacTGTTGTATCTGTTGAATTACAATGTATGTTTTAGACAGATTATACAAATCTACCAAATACCCACAGAATTATTCATTTTCTATCACGGATGCAGAGAAACAGGACATGCACAAGCtgaaatgcaaacaaaacaaagcatGAAGAAGCAAATAACTGACATGATGGCACTCAGTATGATCAACTGTAGTTTTAATGGTTTTCTAATTGGTTTCTTCAGTATCCAGGCAGCTGTTCCATCTTGCCTCCTGTGTTCCTGTTCTGGCCTCGGCGTGACCggttccctttttttttttacagtcctttttGATTTAATGTTAAAGAACAGTCGTATAAGAAAAGCAGTTCAGAGCAGTCCTGTTTGTTGGTCTAACCTGTCTGGACATCAGTGCCATTAAACGTTTGTATTCGTATTAGGTATTATTGAAATTCAGTGGCGGACTCTTTATTAAAGGGCTGGAAGGTCATAAGGCTAGAATAAACCATAATGTACTGCACTTTCTTTATTGTGTTGAACATTGGAATGAAACATTACATAAAGAAATGGTTATATAGGGATTAATGTATCTAATATTGCATACCTGTagaataaagtgtattttgctTCTTT

Function

symbol description
zc3h7a Predicted to enable miRNA binding activity. Predicted to be involved in production of miRNAs involved in gene silencing by miRNA. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A).

NR:

description
PREDICTED: zinc finger CCCH domain-containing protein 7A isoform X3

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24945 ZC3H7; zinc finger CCCH domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232070.3 True 4795 mRNA 0.45 23 36951907 36973852
XM_015600976.2 False 4792 mRNA 0.45 23 36951907 36973852

Neighbor

gene id symbol gene type direction distance location
trnat-cgu_1 NA coding upstream 74013 36877823 ~ 36877894 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 273985 36651834 ~ 36677922 (+)
zfand2a zfand2a,LOC107568938 coding upstream 371536 36566207 ~ 36580371 (+)
mrm2 mrm2 coding upstream 1133321 35811037 ~ 35818586 (+)
snx8 snx8,LOC107758331,LOC107592787 coding upstream 1152907 35775028 ~ 35799000 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 36843 37010695 ~ 37025525 (+)
nsmce1 nsmce1 coding downstream 114349 37088201 ~ 37096868 (+)
LOC103021790 LOC103021790,LOC108433116,LOC103481129 coding downstream 1033669 38007521 ~ 38058413 (+)
LOC111195542 NA non-coding upstream 37169 36881360 ~ 36914738 (+)
G202341 NA non-coding upstream 279491 36671991 ~ 36672416 (+)
G202311 NA non-coding upstream 435979 36515648 ~ 36515928 (+)
G202307 NA non-coding upstream 481658 36409580 ~ 36470249 (+)
G202269 NA non-coding upstream 622211 36196592 ~ 36329696 (+)
G202394 NA non-coding downstream 57371 37031223 ~ 37032350 (+)
G202400 NA non-coding downstream 63536 37037388 ~ 37037645 (+)
G202405 NA non-coding downstream 85666 37059518 ~ 37060161 (+)
G202406 NA non-coding downstream 87403 37061255 ~ 37063186 (+)
G202483 NA non-coding downstream 160874 37134726 ~ 37134983 (+)
G202336 NA other upstream 11628 36589448 ~ 36940279 (+)
LOC111195488 NA other upstream 1827289 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 3136921 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 3677000 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 3973997 32974320 ~ 32977910 (+)
LOC103041887 NA other downstream 9471 36983323 ~ 36993332 (+)

Expression


Co-expression Network