col28a1


Basic Information

Item Value
gene id col28a1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14301910 ~ 14339402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236460.3
CTCACTGCTGAATGGCTGTtcagttactctctctctctgcttctgaGTGAACCCACTCTCTGGATTATCACTTAACTCGGATGAACGAGTTATTCAGGACATAACTAACACACTTTATTCTAGATAAAGGGTTGCAGGTGTGTGTCAGAGCTCAGGATGCAGTGTGGCTGGGTGCTCTGTGTCCTGTTACTGGTTTTCTCTGGGAGGGGAAGAGGACAGAGCAGACGGAGAGGCAGACAGAAGGTTGAGAACCTGGTCGTCAAAAATGAAGCAAAAACTCTGATCTGCCCAGTGGAGGTGGCCTTCCTCGTGGACAGTTCTGAGACGGCTATGGCACAGTTTGAGAAGCAGCGAGAGTTTGTGACACGTTTTGCTTTGCAACTGATGCAGCTGGATGTGGCCGGCTGGCGTCTGCGACTTCGTTTGGCCCTGATGCAGTACAGCAGCACCGTCTCTGTGGAGCACAACTTCCGTGACTGGCAGGACGTGGATGTCTTTCAGAGCAGGGTGGCTGCTATGTCCTTCATCGGGCAAGGCACCTACTCGGCATATGCCATCTCCAACGCCACCCAGCTGTTCGCCAGGGAGACAGCAAGCAGCAGTGTGCGTATTGTCCTGCTGTTTACAGACGGTGTAGACCACCCACGCAGCCCCAGTGCTTTGTCGGCGACAGCTGACTCCAAAAACCACAACATCAGAGTGTTCGCCATTGGGCTGTCCCCTCAGTCACGAGACGGCCAGAGGTTTGCCAGGCTGAGGTCCATTGCCAGTGCCCCCGCGCAGCAACATGTGTTCAACCTTGGGGACCCTGAGCTGGATGAAAAACTCTTTACTGAGCTGAGAGCAGCTGCTAATTTAGGGTGTCCCCAACCTAGATCCTGTCTGTGTGACAAAGGAGAGAGGGGTCCAGCAGGAAACCAAGGAAAACCTGGCAATCCAGGTCCTGTTGGACCTCCTGGGCCAAAAGGATCCAAAGGGGAATCTGGTTTGAATGGACGACCGGGAATGGAAGGTGTTGAGGGAAGACCAGGAGCTACAGGGGAAAAGGGCGAGAGAGGAGAATGTGGCGTCATGGGGATGAAAGGAGATCAAgGAGTAGATGGACCACCAGGACCTCGTGGACCTCCAGGAGAGCAGGGTTCTGTTGGTAGCCCTGGTGACACTGGACCAGAGGGTCCAGCTGGACCTAAGGGTGACCGTGGACCGACTGGAGCTACTGGGCCACAAGGGGATGTAGGAACTGGATTTCCTGGCCCAAAGggaGATAAAGGGAATCAGGGCAGACCCGGTCCAGTTGGCCTAGTTGGTGTCGGAGAGCCTGGACTACCTGGTCCACCAGGACCACCAGGAGTGCAGGGAAACCAAGGCTTTCCAGGTGAGGGGGTACCAGGACCCAAGGGGGACAGAGGTTATGAAGGTCCAAAGGGTGTACCCGGACCCTCAGGGTTAGGCATAAAGGGTGAAAAGGGAAACACTGGAGCTCCAGGTTTGCCAGGACCAGTGGGATTTCCTGGAGCTGGGATCCAGGGAGAAAAGGGTGACCAAGGACCAGTTGGCCCACAAGGCCCCAGAGGAACTCCTGGTGTGGGCGTTGTGGGACCAAAGGGGGACCAGGGCTTTCCTGGTGAACACGGACAACCAGGAGAAAGAGGAGTGGGAGAACCTGGCCCAAAAGGTGAGCCAGGACCAGATGGCGCTCCTGGAATTCCTGGTATCCCAGGAGAAGATGGATCTGTAGGGCCAAAGGGTGAGATGGGGTTACCTGGGGTAAAAGGTGCTCCTGGTGGACCAGGAATAGGACTTCCAGGGGAAAAGGGTGATAGGGGTGACCGTGGAGTTCGAGGTTTCCCTGGATCTACTGGACCTGTAGGACCATCAGGTGCTAAAGGAGAGCCCGGTAGTCTGGGTATGACAGGGATGCCTGGCCCTCCTGGTCGTGGATTGCCTGGTTCAAAGGGTGAACTAGGTCCCATTGGTCAACCAGGTCCAGTAGGAGAGCCTGGCATTGGAATTGCGGGGCCTAAGGGTAACAGAGGACCACCTGGGCCAACTGGGCCACAAGGGATAAAGGGAGAGGGCTTCCCTGGGGTTCAGGGACCTCCAGGGTTGAGAGGACCACCAGGGGAAATGGGCCCAGAAGGCAAAGGAATACCAGGACCTAAGggagagagaggaatacCTGGGGTTTCTGGCCCTCCCGGATCACCTGGAATAGGTCTTTTTGGACCAAAGGGTGCGACTGGCCAGCAAGGCCCTCCAGGTCCATCAGGTGCACCTGGAGAGGGCATTCAAGGGCCAAAGGGGGAGCCAGGATTTCAAGGATCACCAGGCCCAAGAGGACCCCCGGGAGACGGCCTCCCTGGAGAGAAGGGTGACAGAGGTCTGTCGGGTGAACGTGGGAGAAAAGGAGACAGAGGGGATTTTGGGCCACCTGGACAAACAGGACCAGCGGGGGAACCTGGAGAGAAAGGGGACCCAGGTCTCTCAAGAGAAGAAGTGATCAAAATAATCAGGGAAATCTGTGGCTGCGGTCTGAAGTGCAGGGAGAGTCCCTTGGAGCTGGTGTTTGTGATTGACAGCTCGGAGAGCGTGGGCCCAGAGAACTTCGAGGTTGTGAAAGACTTTGTAAACTCGCTGGTTGACCGTGTATCTGTGAGCAGAGAGGTTACCCGGGTAGGGGTGGTGGTGTACAGCTACATAGACATGGTGGTGGTCGACCTGCTGCAGCTGTTTGACCAGGCCAGAGTAAAGGCCGCAGTGAGAAACATGCCCTACCTGGGAGAGGGCACGTTCACGGGCAGTGCCATCCGCCGTGCCACAGGCCTCTTCCAGGCCTCCCGTCCAGGGGTCAagagggttgctgtggtgttgacaGATGGACTGGCAGACAGACGAGATAGAGTGCCGCTGGGCGAAGCTGTAGAAGAGGCGCACGCTGCCGACATAGAGATATTCGTTATTGGAGTGATGAATCGTGGTGACCCACGGTACCAGCAGTTTGAGAACGAGATGAACTACATGGCGTCATATCCAAATGAGGAGCACGTCCACCTGATCAATGACTTTATCAGCCTGTCCACCTTGGAAAGTAAGTTACTAAGTCATATCTGTGAACATGGTGATGGAGGGTTATTTGGTCCAGATCGGAATGGTCTATTCCCACTTAGCCCTGAGCCCACACTAGAGAGTCCAGAGACATCTACTTATGATAATAACTTCCACACAGCTGGCACAGAGCCTGAATTCCCACTGAAGCCCAAGACTCCCTCTCCTCCTCGGGGAGACGATGGCAGTGCTGATAATGAAATTGAAAATGGCAGAagtttggtgttttttgaggGGCCAGCAAGCGAGCTCCATGAGCTCGCAGCAGCATCATCAAGGAGCAGAGCCAATCTACAGTCACCTGCCGTTTCTGTGATGGGTCCGAGTGAACATACCCCCAGTAACTGGATGCATGACCTGGAGAGAAGCTCCCCTCCACAGCTTCCACCACCCCCCCGACAGCCAGACAGCTTTATACCAGGCGCAAACTGTAGGCAGCGATTAGACCCTGGGCCATGCAGGAACTACGAGATATACTGGTACTACGACCCAGAAGCCAATGCCTGCGCCCAGTTCTGGTATGGTGGTTGCCAGGGCAACAGCAACCGCTTCGAATCACATGACAGCTGCAAGAAGACTTGTGTACGAACATAACCGAACATTCGCCACGCTCCAGGTGTCTCGTTCTTTACGAGTCATCATTTTCAGTGCAGCAGTTTTTGTGGATACTTTTAGGTTATATTGACTTGAATGCACTGTACACATATGTGaactatttaatttcttttttctcgTCTGAGAGGGAAATAACAAGGCCAGCATTAGCCACCAGgttaaaaatatggtttaaatgACTAACAAGGCTTAGACTTCACATTTCTAGAAGTTTGCTTCTTacactttttataaaaataaaatctttcaTTTTTATGAATGGGTATAATATGGTTTACAAGTGCCTACAGTTACTCATTTATTCTTAAACCGTGTAAATACAATTTGTCCAAgatattatcaatattttattaggAAATGCTattaactggtctgtaactatATGGTAAATGTGTAAAGTATACTGTGTTGTAGCTAGTCtgtgtataatattttttacaggaaaaaatgaaggtgctgttttatcatttttccaGAAACAGATTAAGGTTATGTGCAACTATAAAATTACTTTTGTTAAATGCTATATCAGTGTTCTGAAAACCACACATGTATTTCTGTGTTCATTACTATATATCTTAtatgaatgaaagaaagaatgaatgaatgaatgaatgaatgaatgaatgtatgcTGTAGTTACATTATTTCTCAGTGTAATATCATAACATATGAATGGATGTTGAgtgtgtaaaacaaaaaatccagATGCAGATTCTCTAGTTCATGTCTGTTTTGGCAGTATAACAATGGGGCTAGTTATCAGTTATTGTCCACATCTCTGTAAAGTTGTATTGCAAAGAGTTGTATATATATgggaataaagtaaataaacaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236460.3 True 4560 mRNA 0.51 35 14301910 14339402

Neighbor

gene id symbol gene type direction distance location
LOC111195557 NA coding upstream 312972 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 396872 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 507798 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 635582 13659887 ~ 13666328 (+)
LOC103042421 NA coding upstream 833807 13463299 ~ 13468103 (+)
sdhaf3 sdhaf3 coding downstream 10655 14350057 ~ 14364677 (+)
jarid2 jarid2 coding downstream 738142 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1061521 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 1126090 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 1253041 15592443 ~ 15611187 (+)
G197557 NA non-coding upstream 104845 14193174 ~ 14197065 (+)
G197555 NA non-coding upstream 126240 14175339 ~ 14175670 (+)
G197550 NA non-coding upstream 162782 14127431 ~ 14139128 (+)
G197547 NA non-coding upstream 227490 14069804 ~ 14074420 (+)
G197495 ptp4a3,LOC103031245,LOC108413163,LOC107702466,LOC107571462,LOC108272580,LOC107598212,LOC107738588,LOC107731571 non-coding upstream 269628 13917348 ~ 14032282 (+)
G197609 NA non-coding downstream 37076 14376478 ~ 14376705 (+)
G197617 NA non-coding downstream 70092 14409494 ~ 14446246 (+)
G197630 NA non-coding downstream 152657 14492059 ~ 14492550 (+)
G197646 LOC107731557,LOC107754811,LOC107702657,LOC107672863 non-coding downstream 336119 14675521 ~ 14719538 (+)
G197657 NA non-coding downstream 397953 14737355 ~ 14745016 (+)
rpa3 NA other upstream 8842 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 939252 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1337561 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1373383 12889358 ~ 12928527 (+)
G197106 NA other upstream 1527414 12715368 ~ 12774496 (+)
tac1 tac1 other downstream 126863 14466265 ~ 14468882 (+)
G197665 NA other downstream 455018 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1422521 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1982540 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 2005715 16345117 ~ 16359668 (+)

Expression


Co-expression Network