LOC103040077


Basic Information

Item Value
gene id LOC103040077
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10740887 ~ 10771033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236486.3
CTAAGAGCAAGGCTTGAGTCCTTACCGGGCAGGGTCACACAAAATGGAAcataataaatcatatattGGTCATATTTCATGCCACAGCAACCGTTTCCAAATACAATGAATGATATCAGGTTAAAGTAGGCTTGTCTGCTTTTGCAAGTGTGTAAACTGAAATATGGCATGCTtgaactaaaatgttttattatactcTCAGTAGATTCAGTTTTGTTCTGTTGAGCCGAGCCCAAAGCTTCAGAATCGACTCCCTGTTCTCAAAAGCGGATGAACTCTTCGGCGGAGCCGACTCCCAGCCCTGGCCTATGCTGAAGTTTTCTAGGCCAAAATGGCGCGTGCCGTGCGTGCCTCGCAtgtttgtgtacattttttttattgtgcgcGTTTAGCTCGGACAGTACGGTAGCATCACGGATAGGGGCGTGTGTGCGtagtggagagagagaaggtggcTGGAGCTCCGCGTACACAGCCTGTTTTGTTTGCCGTCAGCTTCGCAGCGttggaggaaagaaagagagagacagggagaaggAGAGGAGAGCAGCAGGGAGGAGGTCGGAGGAAGAAGGGAGGGATGAATAGATAGAGGAAGAATGAGAGAAGTCTTCCAGCCTCCAGAATCATGAACGGTGCCCTCTACACCTCGTTTTTCCAGGGCCAGCTGGAGTCCGCGCTGGAGCAGGTGGTGCAGCTCGCCGTGCAGGAAATAACCAAGAGCGTTGGCGCCAGCCTGGGGTCCATGCTGCTGGAAACGGCCTCCAAAGAGCAGGAGAACCAGCGGCTCAGGTCTAAGCTCCAGGGAGGAGATGGCAAGGCGAGAGACGGCGAGGAGCCCGCGGGAACCAAAGACGAGAAGCGGAGCTCCTGCGTGGGCTTTCAGGCGGACTCGCTGCGGCTGGAGCAGAAGAGGAGAGCTGTTGGTCAGCTGAAGATGGTGATGGAGCGTGTTCTGGAGTTTGCGTTGTGTGAACTGACCAAAATCGTGGAGGACAGTTTTGATGACTTGTTGCTGGAGCTGAAGAAGACCGAGCGGGAGCATGAGAAGCTCAGGGAGCAACTCAAGGAGATGGAGGAAAGCGGAGCTCGAGACGAGGAGCCACAGgagcaggaaaacaaaactgactCACCAGGCAGCTCGGAGGGAGCAGGAGCTAAAGAACAAGGACAGGAACTGACTGAGAACACAAGCGAATCGGAGCCGGAGAGGCAGGCGGTCATCACCGTGTCTCAGGACTGGGTGCCAATTCTGGACAAAGTGTTTGGTCAGAAGTGGTGCAGTGACCTGTGGCACATTAAGGAGCTGAGCAGTAAGGAGGAGTGCCCCGGGTCAGGGGCTGTGACAGATGTGGACAGCCTGATCCAGGAGAGTTTATCTCCAGCTCCTCAGAAAAATGCAGAGGTCACACCAGAAGTCACAGCAGACCCGCCTCAGTGGCTGCAGACACATGATACAGAGGTCACAACCGCTGACCCCCAGTGTACTTCGGTCAGCAGCTCTGTTGGTGAAGATTCTCAGCTGAGGTCGCCCTCCATGTTGCACCGACTCCTCACTCTTCCCTCACAGCTGCTGGAGGACGATGAAGAGTCCATGGAGGCTCTTCCCAGCCTGGCTGACCCTGAGGATACTGTAGGGGCTGCAGTGACTCCAGGCCAAAGCAGTCAACAAGACAAAATGGAcaatgaggaggaggaggaggaggaggaggcagctCAGGAGGAAGAGGTAGAACATGGAGACCATGGAGACTCCTCCAGGATTAAAGGTGGAAAAAAGCTCCATGTCTGCAAAGAGTGTGGCAAGAAATTTGCCCGCTCAAACCTGCTCAAAATTCACCGGCAGACGCATAAAGACAAAGACATTGCAGCCCACTGCCCCGAGTGCGGGAAGCAGTTTTCCCACCTGAGCAAACTCCAGGCACATCTGCGGACACATTCAGGGAAAACCACGTGAAGAAACCGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236486.3 True 1968 mRNA 0.54 4 10740887 10771033

Neighbor

gene id symbol gene type direction distance location
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding upstream 114470 10610474 ~ 10626417 (+)
LOC103042831 LOC108438410,LOC108257051 coding upstream 142724 10593735 ~ 10598163 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 167731 10570303 ~ 10573156 (+)
LOC107197051 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 177635 10545576 ~ 10563252 (+)
LOC107197050 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC108438409 coding upstream 201538 10536480 ~ 10539349 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding downstream 25089 10796122 ~ 10803111 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding downstream 48004 10819037 ~ 10838287 (+)
utp18 utp18 coding downstream 93705 10864738 ~ 10878687 (+)
LOC103035340 LOC108438873 coding downstream 110742 10881775 ~ 10902503 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 170605 10941638 ~ 10954911 (+)
LOC111195506 NA non-coding upstream 103622 10632355 ~ 10637265 (+)
G196649 NA non-coding upstream 112836 10627367 ~ 10628051 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 256122 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 270739 10469798 ~ 10470148 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding upstream 477508 10263037 ~ 10263379 (+)
G196686 NA non-coding downstream 8117 10779150 ~ 10781295 (+)
G196687 NA non-coding downstream 14127 10785160 ~ 10811742 (+)
G196697 NA non-coding downstream 67881 10838914 ~ 10856867 (+)
G196684 NA non-coding downstream 75025 10846058 ~ 10863254 (+)
G196702 NA non-coding downstream 133023 10904056 ~ 10906225 (+)
G196633 NA other upstream 248786 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 679788 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 852670 9774379 ~ 9888217 (+)
G196419 NA other upstream 1000119 9740359 ~ 9740768 (+)
G196415 NA other upstream 1019617 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 240008 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 631122 11402155 ~ 11417703 (+)
polr2k NA other downstream 780627 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 916366 11687399 ~ 11746235 (+)
G197106 NA other downstream 1944335 12715368 ~ 12774496 (+)

Expression


Co-expression Network