LOC103021790 (LOC103021790,LOC108433116,LOC103481129)


Basic Information

Item Value
gene id LOC103021790
gene name LOC103021790,LOC108433116,LOC103481129
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 38007521 ~ 38058413 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237381.3
TTTGAGCGGCTCAATATGAGCGGAGGACCGGAGCACGAGCGCGGCGTGCAGACGGAGCGCGCGCCTTCCCGAGCGGGACGTCTGCTCGGTGGAGTTACAGCAGTGCTGATTATGATGATGCGCGCGGCGCACGGAGCGACGCGGCGCGCGGCGCACGGTGACCGACACGAGGACGCGGCAGCTGCGCGGGGCGAGGAGGAGCGATGAGGAGGAGAGCTAACGGGGTGCGTGCGCTCTCGCGTGCCCGGTGTCCGGTGCCAGTGTCAGGAGCTAtaggaggagaagaagatgaACTAGTGTTATAATTaatatcttgtcttgtctctgatagagagagaaaaagaatgtgtgtgtgggctattatgagtgtgtgagagagctcgTGCGTGCGTGcatttgtgtgcgtgtgtgtgtctctgagtAATTGTCCACCACCGCATATACATCAAAGAGCGCGGCGCGTGCGGGACTGAGGGCAGCCCGGCTGGATGGGGCAGGTCGCCGCGGTGCCCCCCCGGACCCCATGGAGACATGGCATATAGGGTCCTGTCCAGCCGCCTCGCGCCGCCCTCCAACAAGCTGAGCCGGAGGTTCGTCTTCGTGTTCACGCTCTCGCTCTCCTTCACCTATCTCTGCTACAGCGCGCTCTTCTGCTCGCGCGCCGTCATGCCGCGGCTGCCCGGCCTCGAGGAGCACGGCTGCGTGCGCGCGGAGAGCGCCGGCGCCAAGAAGCTGCTGCAGAAAGCGCCGTTTTGCGCAGCGCAGCAGAGCACGCGCACACCAACGCCGCCGAGCCCCGCGCGCAACCAGACCCACACCGCCAAGCGCCAGCCCGCCGCGCAACCCGCGGAAAAAACCGCGCGCAACGGCACGAGCGCGCAGCGCTACGGCAACAAGAAGCTGCCCAACGCGCTGATCGTGGGCGTGAAGAAGGGCGGCACGAGGGCCGTGCTGGAGTTCATCCGCATTCACCCGGACGTTCGCGCGGTGGGAACCGAGCCGCACTTCTTTGACAGGAACTATGACAGAGGCTTGGACTGGTACAGAAGTCTGATGCCGCGGACGCTGGACAGCCAGATCACCATGGAGAAGACCCCCAGCTACTTCGTGACCCGGGAAGCCCCCCGGCGCATCGCCAGCATGTGCAGGGACACCAAACTCATCGTGGTGGTCCGGAACCCAGTGACTCGAGCCATCTCGGACTACACGCAGACTCTGTCCAAAAAGCCTGACATCCCCACCTTCGAGGAGCTGGCCTTCAAGAACCGGAGCCAGGGGCTGGTGGACACGTCCTGGAACGCCATCCGGATCGGCATGTACATCCTGCACCTGGAGAACTGGCTGCAGTACTTCCGGCTCTCGCAGATCCACTTCGTGAGCGGCGAGCGGCTCATCACGGACCCTGCCGGGGAGCTGGGCCGAGTGCAGGACTTCCTGGGCCTGAAGCGCATCATCACGGACAAGCACTTCTACTTCAACCGAACAAAAGGCTTCCCGTGCCTGAAGAAGCCCGAGAGCAGCAGCCTTCCACGCTGCCTCGGGAAGTCCAAGGGCAGGACGCACGTGCAGATCGACCAGGAGGTCATTGAGCAGCTGCGGGACTTTTATAGACCTTTCAACATCAAGTTTTACGAAATGGTAGGACACGACTTCAGGTGGGACTGACGGGGGCTGAGGAATATGAACAGGAGACCCTCTTGTTAATCAGTGAACGAGTCGTCCAATCAGATCTGCCGATAAGCACCGGTttgaactaggggtgggcgatatggccctataataatatcacaatattttgtggtattttcgtgataacgatactt
>XM_022683408.1
TTTGAGCGGCTCAATATGAGCGGAGGACCGGAGCACGAGCGCGGCGTGCAGACGGAGCGCGCGCCTTCCCGAGCGGGACGTCTGCTCGGTGGAGTTACAGCAGTGCTGATTATGATGATGCGCGCGGCGCACGGAGCGACGCGGCGCGCGGCGCACGGTGACCGACACGAGGACGCGGCAGCTGCGCGGGGCGAGGAGGAGCGATGAGGAGGAGAGCTAACGGGGTGCGTGCGCTCTCGCGTGCCCGGTGTCCGGTGCCAGTGTCAGGAGCTAtaggaggagaagaagatgaACTAGTGTTATAATTaatatcttgtcttgtctctgatagagagagaaaaagaatgtgtgtgtgggctattatgagtgtgtgagagagctcgTGCGTGCGTGcatttgtgtgcgtgtgtgtgtctctgagtAATTGTCCACCACCGCATATACATCAAAGAGCGCGGCGCGTGCGGGACTGAGGGCAGCCCGGCTGGATGGGGCAGGTCGCCGCGGTGCCCCCCCGGACCCCATGGAGACATGGCATATAGGGTCCTGTCCAGCCGCCTCGCGCCGCCCTCCAACAAGCTGAGCCGGAGGTTCGTCTTCGTGTTCACGCTCTCGCTCTCCTTCACCTATCTCTGCTACAGCGCGCTCTTCTGCTCGCGCGCCGTCATGCCGCGGCTGCCCGGCCTCGAGGAGCACGGCTGCGTGCGCGCGGAGAGCGCCGGCGCCAAGAAGCTGCTGCAGAAAGCGCCGTTTTGCGCAGCGCAGCAGAGCACGCGCACACCAACGCCGCCGAGCCCCGCGCGCAACCAGACCCACACCGCCAAGCGCCAGCCCGCCGCGCAACCCGCGGAAAAAACCGCGCGCAACGGCACGAGCGCGCAGCGCTACGGCAACAAGAAGCTGCCCAACGCGCTGATCGTGGGCGTGAAGAAGGGCGGCACGAGGGCCGTGCTGGAGTTCATCCGCATTCACCCGGACGTTCGCGCGGTGGGAACCGAGCCGCACTTCTTTGACAGGAACTATGACAGAGGCTTGGACTGGTACAGTCTGATGCCGCGGACGCTGGACAGCCAGATCACCATGGAGAAGACCCCCAGCTACTTCGTGACCCGGGAAGCCCCCCGGCGCATCGCCAGCATGTGCAGGGACACCAAACTCATCGTGGTGGTCCGGAACCCAGTGACTCGAGCCATCTCGGACTACACGCAGACTCTGTCCAAAAAGCCTGACATCCCCACCTTCGAGGAGCTGGCCTTCAAGAACCGGAGCCAGGGGCTGGTGGACACGTCCTGGAACGCCATCCGGATCGGCATGTACATCCTGCACCTGGAGAACTGGCTGCAGTACTTCCGGCTCTCGCAGATCCACTTCGTGAGCGGCGAGCGGCTCATCACGGACCCTGCCGGGGAGCTGGGCCGAGTGCAGGACTTCCTGGGCCTGAAGCGCATCATCACGGACAAGCACTTCTACTTCAACCGAACAAAAGGCTTCCCGTGCCTGAAGAAGCCCGAGAGCAGCAGCCTTCCACGCTGCCTCGGGAAGTCCAAGGGCAGGACGCACGTGCAGATCGACCAGGAGGTCATTGAGCAGCTGCGGGACTTTTATAGACCTTTCAACATCAAGTTTTACGAAATGGTAGGACACGACTTCAGGTGGGACTGACGGGGGCTGAGGAATATGAACAGGAGACCCTCTTGTTAATCAGTGAACGAGTCGTCCAATCAGATCTGCCGATAAGCACCGGTttgaactaggggtgggcgatatggccctataataatatcacaatattttgtggtattttcgtgataacgatactt

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 2 isoform X1

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07808 HS3ST2; [heparan sulfate]-glucosamine 3-sulfotransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237381.3 True 1823 mRNA 0.61 2 38007521 38058413
XM_022683408.1 False 1820 mRNA 0.61 2 38007521 38058413

Neighbor

gene id symbol gene type direction distance location
nsmce1 nsmce1 coding upstream 910653 37088201 ~ 37096868 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding upstream 981996 37010695 ~ 37025525 (+)
zc3h7a zc3h7a coding upstream 1033669 36951907 ~ 36973852 (+)
trnat-cgu_1 NA coding upstream 1129627 36877823 ~ 36877894 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding upstream 1329599 36651834 ~ 36677922 (+)
G202632 NA non-coding upstream 23470 37979728 ~ 37984051 (+)
G202629 NA non-coding upstream 27473 37916091 ~ 37980048 (+)
G202627 NA non-coding upstream 104821 37902401 ~ 37902700 (+)
G202619 NA non-coding upstream 145295 37861946 ~ 37862226 (+)
G202601 NA non-coding upstream 151191 37800616 ~ 37856330 (+)
LOC103041887 NA other upstream 1014189 36983323 ~ 36993332 (+)
G202336 NA other upstream 1067242 36589448 ~ 36940279 (+)
LOC111195488 NA other upstream 2882903 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 4192535 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 4732614 33260173 ~ 33274907 (+)

Expression


Co-expression Network