LOC103028750 (LOC108424743)


Basic Information

Item Value
gene id LOC103028750
gene name LOC108424743
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28681071 ~ 28699780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245656.3
TTCCCACCTCGCTGACTTTGTTTTGCACCGCAGGATGTTTTCCTCGGCGCGAGTCTTTGAAGTCGCGCGGGACTCATTTACTCGCTGCTTTGAACAACCGGATCAAAGCGGCTTATTTAGCCTGAACCGTTTTCACGGAATCGTTTTCACTGAATCGTTTTCCACTGACTCTTCGTCCTCTTTGTCGGTTAGTTTgccttttacaattaaattcaaACATTGCCCTGTTTCCACACCGtcttgtgtctctgtgtgtgtggtagtgtgtgtttggtagtaTGTTGGGTAATTATGTGTCTTCTACACAAGGAGAAAAATGGACCAGTAGAGTAATCGACacgtgtgtttgtttatgttgaTGAGCTGGAGTATGCtgtctagtgtgtgtgtgtgtgtgtgtgtgagcagctcCGAGTCTGAGAGCTTTCTTCACTCCACACTGAGACAAAGGCAGCGCGAGACGCGTCTGAAGATGAAgatgttttgatgcttttttatgtttttatcttaTAAACGGAACTTTTAAATCTACTGAGGCGTTTTTGCTTCACTGGAGggaaaacttgtttttttaaccCCATAACCCCCACTTATCTCCCACACATCCCCGTGTCCAGCTGTGGTGCGCTCGCGGTAAACCGCGCGGGATGAATTTCGAGCAGCTGCTGGCGGCGGCCGGGGGCTTCGGTAGGTTCCAGAAGACCCTGTACGTGTGGATCTGCCTCCCGCAGGTCCAGCTCGCCTTCCACATGATGGTGAGCGTGTTCACGGGGGCCACGCCGCCGCACCGGTGCCGGAGCGCGAGACCGGGATCCCCGCACTTGAACCAGTCGCACGCGGTCGTGCTGGAGCTCCGGCTCGCGAACTCCAGCGCAGGGATCTCCGCAGGGCACGCGGACGCGTGTAGCGCAGGATCAGCCGAGAACCGGAGCGCTCGCTCCGCCTGCGAATCTGGGTGGGTTTACAGCCAGGACGTGTTCGAGAGCACCACCGTCACTGAGtggGATCTTGTCTGTGGCAGAGCAAGCCTAAACAGCATTTGTTCTTCCATCTATATGCTGGGCTTACTTGTGGGAGCTGTTGTGTTTGGAGCAATGGCTGACAGGTATGGTAGACGCTTTGCCCTGCTCCTGTCTCTGGCCCTTCAGACAGTGTTCGGTGTGGCTGCTGCCTTCGCCCCAAATTTTCTGGTGTATGTGATCCTGCGCTTCCTCATAGGAACCACCATCTCAGGCATAATCATCAATGCCTTTGTTTTAGGCACAGAATGGACGTCCACAAAGAGACGCATGCTGGCTGGAATTTTCACGGATTATTTCTTTGGGCTGGGCTACATGCTGCTGGCAGGCATTGCTTACCTCATTCGAGACTGGAGGAAGCTGCAGCTCGCCATTTCAGCCCCAGGGTTcctctttattttctacatCTGGGTTCTTCCTCATTCAGCCCGCTGGCTGCTGGTAAACGACAGGAAAGAGGAGGCGATTGTTCTTCTGCGTAAAGCAGCCATGGTCAATGGCCGTTCTTTCCCTACCACTGTGCAGCTGGACTGGTGTGATGAGACGGAGGGGCGGAGTCAGCACTCGGTTGCAGATCTAGTCCGTACTCCAGAGATGAGGAAGAGAGCCCTCATCCTCTACTACATCTGGTTTGTTAACGTGTTGGTGTATTATGGTCTGTCTCTGGGGGTATCTGGTCTGGGCACAGATCTGTACTTTACTCAGTTTATGTTCGGATTGGTGGAGGTCCCGGCGAGGTcgctggtgctgctggtgctgcccTGCAGCCGGCGGATCCCGCTGAGTGCATTCCTCTTCATCGGGGGCGGAGCCTGCCTCCTCATGCTCGCTGTCCCAGCAGaTAATCCTAATATACAGACTGCTTTGGCTATGACTGGGAAGTTTGGAATCACAGCTTCTTTTGCTATCATCTACATATACTCCGCTGAGCTCTTTCCTACAGTGCTTCGACAGACGGGCATTGGTGTCTCCTCCATGTTTGCACGAATGGGTGGAGTTTTAGCTCCAATGATAAATCTGCTTGGACAGCATAACCCAGTCGTGCCTGTACTGATATTTGGCTCCACCCCACTTCTGGGTGCAGCTCTCGCATTGGCCCTGCCTGAAACAGCCAATAAACCACTGCCAGATACCATCCAGGATGCAGAGAGATTTTCCAATGAAAAATATGATCAGGCATTCCCTGCAGACACCATCCAGTCACCAAGCAGCACAGAAGGCCAAGAACTGCAGCACCTAACAAATGAGTCTCCATAGACACTCATTCATAGAGCTTGCAGAAACGCACATAAACAAGCCTACATATCAGTAATAGCATGGGAGTTAGACAACCTGCAGGTCAGCTAGACGGATCCATATATAAATGCACAGATTTATACAGACTCTACATTAGACATTCGTCTTTTCTATTTGAtattttgtatgtatattttatactgCATTGTTAAGATACTTTGGTCAGTTTTTATAGTGTCAAATGTAACATAGCTGCTCTGTcatcaaaggttttaaaccacTGGTGGCCATGGTTCAGTGAACAGTGAAAATATGGTACCTCTGGTACGTTGTTTGTTCAACTACACTGCTGTTAGtcatatacagtaaatctatgcaataatatcacaattCACTGTAAAGCTCTTATGCAAACCCTTTTGTAAGCAAAACAGCAGAAACATGATTTAGCATCAGCATCATCTGCCCTGTTTTATAATGATCATGAAGGATATTTATTTCCTGTGAAATGATTTGCATGTCTGTTACTGTAACTGAAACTGTGACTTGTGTTGTACGTTAAATATGCGTTAATGTATAATCTTTTAACTGTGAAACTGTGGGGGTAAATTTGCCTTTGTGGTCAGGTTTCTGACTGATCAGTTAGCAATGATGTTCACCATAGTATCCTGTAACAGGAATGGTACAGTTTCTGCCGTTTATGTTCAGATTGAATATGATGTGACAGACGGGACGGTAAAGGGACATTTCTACACTGTGAGACACAAATACACCAGtctgctcaaaaaaaaaaacactaagaaTCGGCTGGTAAGAGTAGTGGATAATTCATTATGTAAAGTCATAGGCTGCGTCTTGCTATAAGCATTCCTGTATTGTTTACATCAAGCATTTCACCATTTTGAGTGCTATGTGTAATTTATTTCCCCAAATCTCCAAAAAGAGACAAACCATGGCAAATTACAgcaaatatattgttattttaagtcTCAGAGTAAGCAGGCTCTTACACATCCTCAAATCTTTCTGTAATTGCCTCACACACAGGCATTGTGATGCAGGTATGGAAGTTTTCAACCCATTTGTTTTAATCTTTGtctttaaacgtttttttttttagttttttgtggcTTGAAGTTAAATGCATCATCCGTAATGAATGTGACTGAATTGGTCAAGATGAAATATACACTCATCAAAAAAATggttgcaaaaatagttgcacccagaagaaagAGTCTGAGTGCAATGAAGGTTACCCGgaacaataaatcattaaaaatcttTTGCTCTTATTTACTgaactacacatacagaagtagtgcgTAAAGCATGTGTAACTCAACATGCCAGACGCCTCGACATGGATTTGTATAGGTAACTAGTGGCGCCCTGCAATCCCATGCATGTCCATATAGACATATGAATTGCAGGGTGCcactattttataaaataaatatatttatttattttttggactgCTGAATACTGCAGTTTAACTGGATAATCCTGTTCCTGACTGCACTTGGCAGGCTATTGTCCATGGGGAAAACCAGCAGTGCCTTTACTAAAACACAGTAATCCTCTGAGAATTACACCTATGTAGGAGTGCAAGGCACTGTAAGACAGATGtccacagtcagacagattGTGCACAAATGGATGAAATTTCAGACCACTGGTTCCCTCCCCAGGAGTGGTAGACCGGGTGATAgttgatttgttactttactttattgtgattatcatgccatagctttatataaaataaaaatagcattaaaaaccaAGCATGACTCGACCCAGCTCAAAGAAAATGGTGAGAAATCTTGGACCAATCCAACTAATAAAGTTGACAGtcagtggacacagtgtttaaacaaATGCCTGGAAATGTACACATTAAAAATTGTCCTTCTTACCTAGTGCTTTGAAGTTTCACCTGTTAATTGTTGAAAGTCCAGCAAGCTGTTCCTGACTGATGCAGATCAAAGCTTATATATATGAAGATCACCGCCTCCAGATTCGGTGGAAATGTTGAAATCCATCAGATCTAAGCTTTCCGCAGAACATTCAGGTGTGGTGATTTGTAAAGATACCTGAGATTTACTGAGCATACTGTAGGTTAAagacatgtatttatttctttgattAAAATATTTCCAAAGAATAGCCTGCTATGTTAACAAGACTTGTTTTTCTTGTATGAACTTTCACTCCTTTTTGTCCTGAGATAGATCATTAGATTTCATTCACACAGTACTGAGATCCACACTACAGTACCTACAGCATTTCTCCAACATTGTGCAgtgcatacattttttattaattttaaagaacAACATTAACTGTTCTTGTTCgtaacatattttacatatatcaaTAATCATAAACTGTAGCTATTTATTGATAAATTATACAATCCATATGAACAGAGATGCAGGATGCTTTGGTCCAGGTTACAAAAGTTTGGCCCAGAGAAAAATGGCAGTGTTTCTGAATTGTGTTCACATACACCTCCTTAACATGATATAGCTTTAACTTAGACTTTTGGTTGTACAGTGAACTTCGACCACTTTGTTCACAGTGATTTCTGGAGGTGCTCTTAAGCCCATGCAGTGATGCCCAGTACAGAATCGTGCTTGTTTTAAATGCAGTGCCTCCTGATAAGGGCCTAAAGCATCTAATACTGACTCTTTGGCCTTGTGGTAAGATAGTTAAAGTCTTCACGGTTTTATGTTGAGAaacattttctgaaattattttcaaaattattttttactttgccCATCTTTGCATCTGAGAGACTCTTCATAGTTGAATGTCAGTGAATTCACTCATGGCATTCTGTCTTTATGTACAGCATCTCCTAAAACTCAGTACACCCCTCATATTTATGTTgatattttactatatctttagatatgacactttgatacaatgtaaagtcgTACGTTAGTCATTGTGtagcttgtataacagtgtaaatttgctgcACCTAAAACTAACTCAACACAGCCATTAACATTAACAAAGCGCTGGCAATAAAATTGAGTACTCCCCTAAGTGAAAATTGTCAAATTGTACCCATTTAGCCATTTTTCCTCACTGTTGTCATGTGTTATTGTATAATCTTTTAACTGTGAAACTGTGGGAGTAAATTTGTATTTGTGGTCAGgtttctgattggtcagttgGCTATGATGAATATAATGACAGGACGGGAAGAGGACAGTTCTACACTGTAAGACACAAGTACACCAGTCTGCTCAAAAATAAAACGCTATGAATCGGCTGGTAAGAGTAGTGGATGATGTTTCCATTTGTTTTTAATCTTTgtctttaaaactttttttttagtttttttgtggaTTGAAATTAAATGAATCAACTATAATGAATGTAACTCAACTGTTCaagatgaaataaataaaaaatggttgCATAAATAGTTGTGACTCTG

Function

NR:

description
PREDICTED: solute carrier family 22 member 13-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08202 SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245656.3 True 5718 mRNA 0.42 10 28681071 28699780

Neighbor

gene id symbol gene type direction distance location
LOC103028128 NA coding upstream 8624 28657320 ~ 28672447 (+)
anp32e anp32e,LOC107706176,LOC106569900,LOC107669588 coding upstream 88884 28584404 ~ 28592187 (+)
jtb jtb coding upstream 167484 28508137 ~ 28513587 (+)
kcnq4 kcnq4,LOC107593542,LOC107706174 coding upstream 174585 28416516 ~ 28506486 (+)
nfyc nfyc,LOC107593541,LOC107591605 coding upstream 277190 28371216 ~ 28403881 (+)
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding downstream 47307 28747087 ~ 28755459 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding downstream 84862 28784642 ~ 28802718 (+)
clasp2 clasp2 coding downstream 108549 28808329 ~ 28874267 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 177790 28877570 ~ 28904102 (+)
pdcd6ip pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307 coding downstream 206742 28906522 ~ 28921254 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding upstream 1909 28672884 ~ 28679162 (+)
G200386 vps45,LOC107593545,LOC106588336 non-coding upstream 31623 28647269 ~ 28649448 (+)
G200399 vps45 non-coding upstream 35551 28642085 ~ 28645520 (+)
G200398 vps45,LOC107670145,LOC107706151,LOC103374652 non-coding upstream 39039 28641167 ~ 28642032 (+)
G200391 LOC108426151 non-coding upstream 63017 28616116 ~ 28618054 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding downstream 3998 28703778 ~ 28745324 (+)
G200488 NA non-coding downstream 26285 28726065 ~ 28728956 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding downstream 37071 28736851 ~ 28738326 (+)
G200511 NA non-coding downstream 70354 28770134 ~ 28782034 (+)
G200628 NA non-coding downstream 318793 29018573 ~ 29019097 (+)
G200341 LOC108426039 other upstream 484873 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 693176 27978282 ~ 27987895 (+)
G200235 NA other upstream 862421 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 940962 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1375485 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 828283 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 842968 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2310146 31009926 ~ 31084633 (+)
G201018 NA other downstream 2312931 31012711 ~ 31015045 (+)
G201207 NA other downstream 3242422 31942202 ~ 31987057 (+)

Expression


Co-expression Network