pdcd6ip (pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307)


Basic Information

Item Value
gene id pdcd6ip
gene name pdcd6ip,LOC107742851,LOC107591619,LOC107696546,LOC107706184,LOC107669307
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28906522 ~ 28921254 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245663.3
GAGAGATCCAGGAAGTGCGGGGCGCTGTTTTTGTCCCACTGCTGTTCTCTGTTCGCCATAAACCCGAGTCTGTTCAGCGGGCCGACATGGCGACGTTTATTTCTGTCCCGTTAAAGAAGTCCTCGGAGGTGGACCTGGTGAAACCGCTGTCCAAATTCGTCGGCTCTGCTTACCCGGCGGGAGAGGAGCAGGCGGAGTACCTGCGGGCGGTGGAGGAGCTCAACAAGCTCCGCAAGAGCGCGCTGGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAGATCCTCCTACGGTACTATGATCAGCTGTGTGCCGTTGAGCCGAAATTTCCTTTCCCCGAGCTGTGTCTGACGTTCACATGGAAAGATGCGTTTGATAAAGGATCTCTGTTTGGTGGCTCGGTTAAGCTCGCCTTGGCCAGTCTCGGCTATGAGAAGACCTGTGTGTTGTTTAATATTGGAGCTCTGGCCAGTCAGATCGCCTCAGAGCAGAACCTGGACAATGACGAGGGACTGAAGTCAGCTGCCAAGTTTTACCAGCTGGCGAGTGGTGCTTTTGCTCACATCAAGGACACAGTGCTGTCTGCTCTGAATCGGGAACCCACCATGGATATTTCTCCAGAGACCGTGGGCACACTCAGTCAGATCATGCTCAGCCAGGCACAGGAGGTTTTTGTGATGAAAGCCACTGCAGACAAAATGAAGGATGCAATTGTAGCTAAATTGGCCAATCAGGCTGCAGATTTCTACGGTGATGCTTTCAAGCAGTGCCAGTATAAAGAGAACCTGCCCAAGtatttttatttccagGAAGTGCTTCCAGTCCTGGCTGCCAAGCACTGCATGATGCAGGCCACTGCGGAGCTCCACCAGTCAGCGCTGGCCAATCAGAAGAAGCGGTTTGGTGAGGAGATTGCCCGTCTTCAGCATGCCACAGAGCTGGTTAAGACTGTGGCGTCCCGCTACGATGAATATGTAAACGTAAAGGATCTTTCTGAAAAGATCAACCGTGCTCTCACAGCTGCTAAGAAAGACAACGACTTTATCTACCATGATCGTGTCCCTGAAGTTAAGGACCTGGAGCATATTGGCAAGGCAGCACTCGTCAAGACAACCAGCATTCAAGTACCTCTTAGTCAGAAGTTCACAGACCTTTTTGAGAAGATGGTGCCTATGGAAGTGCAACAGTCTTTGAGTCTGTCCAACTCCAGGAGGGCTGATACAGTTAACAGACTTGTGGGCAGCCTGAGAGAGGCAACCAACCTCTGCAATGGGGTGCTGGCCTCTCTGAACCTGCCGGCAGCACTGGAGGATCTGTCTGGAGATTCAGTCCCACAGTCCATCCTGGAGAAGAGTCGTGCTGTAGTCCAGCAGGGAGGACTTCACAGCATTGAGCAGCTCATCAAAGATCTGCCGGAACTACTTCAGAGAAACCGTGAGATCCTGGATGAGtCGCTGAAGATGCTGGATGATGAGGAGACAACAGACAATGAACTCAGAACCAAATTCAGCCAACGGTGGAACAGAACTCCATCTGGAGACTTATACAAACCACTCAGAGCAGAGGGTGGTAATTTCCGCAGTGTGCTGGATAAGGCTGTGCAGGCTGACCAGGTGGTACGGGAGCGCTATAACTCTCACTGTGAGATGATTGCTTTACTCTGCAAGCCAGAGAATGAGCTCTGTGCTGCCATTCCTTCAGCCAATCCTGCCAAGACTCTGCAGGGCAGCGAGGTGGTAAATGTGCTGAAGGCTCAGCTGGGTCAGCTGGATGCGATCAAACGAGAGCGTGAGGTTCTGGAAGGAGAGATAAAGTCTGTGACCTTCGACATGACAGCAAAGTTCTTAACTGCATTGGCTCAGGACGGAGCAATTAACGAAGAAGCCCTTTCTGCTGCAGAACTGGACTCGCGCTATGGCTCTCACACGCAGCGCGTCCAGCAGAATCTACGTGCACAGGAAGACCTGCTGGGCCAAGTGCAGACATCCCATCAGGAGTTTGCGGCCTTGAAGCAGTCCAATGCTGAGGCTAACGACAGAGAGGAGATGCTGAAGAAACTGGCCTCAGCTCATGACAGTTACATTGAGATTACCTCCAACCTTAAAGAGGGCACTAAGTTCTACAATGATTTGACTGAAATCCTTCTGAAGTTCCAGAACAAGTGTAGTGACATTGTTTTTGCCCGCAAGACTGAGAGAGATGAACTTCTCAAGGAATTGCAGCAGAGTATCGCTCGTGAGCCTAGCGCACCTTCTTTCAGTGTCCCTGCATACCAGTCCAACACCTCCACACCTGCAGCAGGAGGCCCCACCCCTGCCCCCAGGACCATGTTTCCAGTGCAGCCCCAGCCTAAAGCCCAGCCTCCAGCAAGACCTCCACCACCATCCTTCACTCCACAGGCAGCCAGCAGCACCCCCGGTCAAGCACCTGCCAGCCAGGTCCCACCACCTGCCAGCTCCAACCCACCACCTATGGCACCAACTTCTGCACCCTCACAGGCTCAAGGACCACCCTACCCATCTTATCAGGGTTACCCAGGGTACTATCAGATGCCGATGGCGTATAATCCCTATGCCTATGGCTATAACATGCCCTATATGCACTATCAGGGCCAGGCCCAAGCTGGATATCCTGGAGCTCCACCTGCCCAGCAGACATACCCCTACCCCCAGCAGCCACCTCAGCAACAGCCATACTACCCCCAGCAGTAGACTATAATTACTGACAAAACCTTCCCCAGCTACAGCCATGCTGCCCCCTGTATACTAGCACTCCTTTCTCTTACTCATAATCTCTAACACCTCCACTCCTTTTCTTTGTCTTTAACACTTCACCTCCTGTGGGCAGATATTAGAACACTAGATGGACCAATGGGATTTGCCCTCACATTCGAAGCCTCAGAGGGAAGCTCTCTGCTCTGGtttggatctctctctctctttctctctctctctctttctcacgctGATTATCTCACTCACACCCAAAGTCAAGCTGCTGGCTGGCTGCCTGCCGCTGCGTATATCTTATTTTTGTAatgaatactgaatatatacTCTAATGCAGGATATGTAGATGTTTTCTTACCCAGAAGATGCAGATAATTGttgggagaaaaaaatactgtaactcTTTCACTATACCTCTGTCTGTACATCTGTCAATCAGCGCTTAGGGAATGGATCAGTTTAATGGACTATTGAATAATGCAATGCATCTGTCACCTTAAAAACTACTTTgcatttttgtttctcttttgttcTTATGTGATTAAAACCTGTCTGATGCTGAAATAA
>XM_007245664.3
ATGGCGACGTTTATTTCTGTCCCGTTAAAGAAGTCCTCGGAGGTGGACCTGGTGAAACCGCTGTCCAAATTCGTCGGCTCTGCTTACCCGGCGGGAGAGGAGCAGGCGGAGTACCTGCGGGCGGTGGAGGAGCTCAACAAGCTCCGCAAGAGCGCGCTGGGGAGGCCGCTGGACAAACACGAGAGCTCGCTGGAGATCCTCCTACGGTACTATGATCAGCTGTGTGCCGTTGAGCCGAAATTTCCTTTCCCCGAGCTGTGTCTGACGTTCACATGGAAAGATGCGTTTGATAAAGGATCTCTGTTTGGTGGCTCGGTTAAGCTCGCCTTGGCCAGTCTCGGCTATGAGAAGACCTGTGTGTTGTTTAATATTGGAGCTCTGGCCAGTCAGATCGCCTCAGAGCAGAACCTGGACAATGACGAGGGACTGAAGTCAGCTGCCAAGTTTTACCAGCTGGCGAGTGGTGCTTTTGCTCACATCAAGGACACAGTGCTGTCTGCTCTGAATCGGGAACCCACCATGGATATTTCTCCAGAGACCGTGGGCACACTCAGTCAGATCATGCTCAGCCAGGCACAGGAGGTTTTTGTGATGAAAGCCACTGCAGACAAAATGAAGGATGCAATTGTAGCTAAATTGGCCAATCAGGCTGCAGATTTCTACGGTGATGCTTTCAAGCAGTGCCAGTATAAAGAGAACCTGCCCAAGGAAGTGCTTCCAGTCCTGGCTGCCAAGCACTGCATGATGCAGGCCACTGCGGAGCTCCACCAGTCAGCGCTGGCCAATCAGAAGAAGCGGTTTGGTGAGGAGATTGCCCGTCTTCAGCATGCCACAGAGCTGGTTAAGACTGTGGCGTCCCGCTACGATGAATATGTAAACGTAAAGGATCTTTCTGAAAAGATCAACCGTGCTCTCACAGCTGCTAAGAAAGACAACGACTTTATCTACCATGATCGTGTCCCTGAAGTTAAGGACCTGGAGCATATTGGCAAGGCAGCACTCGTCAAGACAACCAGCATTCAAGTACCTCTTAGTCAGAAGTTCACAGACCTTTTTGAGAAGATGGTGCCTATGGAAGTGCAACAGTCTTTGAGTCTGTCCAACTCCAGGAGGGCTGATACAGTTAACAGACTTGTGGGCAGCCTGAGAGAGGCAACCAACCTCTGCAATGGGGTGCTGGCCTCTCTGAACCTGCCGGCAGCACTGGAGGATCTGTCTGGAGATTCAGTCCCACAGTCCATCCTGGAGAAGAGTCGTGCTGTAGTCCAGCAGGGAGGACTTCACAGCATTGAGCAGCTCATCAAAGATCTGCCGGAACTACTTCAGAGAAACCGTGAGATCCTGGATGAGtCGCTGAAGATGCTGGATGATGAGGAGACAACAGACAATGAACTCAGAACCAAATTCAGCCAACGGTGGAACAGAACTCCATCTGGAGACTTATACAAACCACTCAGAGCAGAGGGTGGTAATTTCCGCAGTGTGCTGGATAAGGCTGTGCAGGCTGACCAGGTGGTACGGGAGCGCTATAACTCTCACTGTGAGATGATTGCTTTACTCTGCAAGCCAGAGAATGAGCTCTGTGCTGCCATTCCTTCAGCCAATCCTGCCAAGACTCTGCAGGGCAGCGAGGTGGTAAATGTGCTGAAGGCTCAGCTGGGTCAGCTGGATGCGATCAAACGAGAGCGTGAGGTTCTGGAAGGAGAGATAAAGTCTGTGACCTTCGACATGACAGCAAAGTTCTTAACTGCATTGGCTCAGGACGGAGCAATTAACGAAGAAGCCCTTTCTGCTGCAGAACTGGACTCGCGCTATGGCTCTCACACGCAGCGCGTCCAGCAGAATCTACGTGCACAGGAAGACCTGCTGGGCCAAGTGCAGACATCCCATCAGGAGTTTGCGGCCTTGAAGCAGTCCAATGCTGAGGCTAACGACAGAGAGGAGATGCTGAAGAAACTGGCCTCAGCTCATGACAGTTACATTGAGATTACCTCCAACCTTAAAGAGGGCACTAAGTTCTACAATGATTTGACTGAAATCCTTCTGAAGTTCCAGAACAAGTGTAGTGACATTGTTTTTGCCCGCAAGACTGAGAGAGATGAACTTCTCAAGGAATTGCAGCAGAGTATCGCTCGTGAGCCTAGCGCACCTTCTTTCAGTGTCCCTGCATACCAGTCCAACACCTCCACACCTGCAGCAGGAGGCCCCACCCCTGCCCCCAGGACCATGTTTCCAGTGCAGCCCCAGCCTAAAGCCCAGCCTCCAGCAAGACCTCCACCACCATCCTTCACTCCACAGGCAGCCAGCAGCACCCCCGGTCAAGCACCTGCCAGCCAGGTCCCACCACCTGCCAGCTCCAACCCACCACCTATGGCACCAACTTCTGCACCCTCACAGGCTCAAGGACCACCCTACCCATCTTATCAGGGTTACCCAGGGTACTATCAGATGCCGATGGCGTATAATCCCTATGCCTATGGCTATAACATGCCCTATATGCACTATCAGGGCCAGGCCCAAGCTGGATATCCTGGAGCTCCACCTGCCCAGCAGACATACCCCTACCCCCAGCAGCCACCTCAGCAACAGCCATACTACCCCCAGCAGTAGACTATAATTACTGACAAAACCTTCCCCAGCTACAGCCATGCTGCCCCCTGTATACTAGCACTCCTTTCTCTTACTCATAATCTCTAACACCTCCACTCCTTTTCTTTGTCTTTAACACTTCACCTCCTGTGGGCAGATATTAGAACACTAGATGGACCAATGGGATTTGCCCTCACATTCGAAGCCTCAGAGGGAAGCTCTCTGCTCTGGtttggatctctctctctctttctctctctctctctttctcacgctGATTATCTCACTCACACCCAAAGTCAAGCTGCTGGCTGGCTGCCTGCCGCTGCGTATATCTTATTTTTGTAatgaatactgaatatatacTCTAATGCAGGATATGTAGATGTTTTCTTACCCAGAAGATGCAGATAATTGttgggagaaaaaaatactgtaactcTTTCACTATACCTCTGTCTGTACATCTGTCAATCAGCGCTTAGGGAATGGATCAGTTTAATGGACTATTGAATAATGCAATGCATCTGTCACCTTAAAAACTACTTTgcatttttgtttctcttttgttcTTATGTGATTAAAACCTGTCTGATGCTGAAATAA

Function

symbol description
pdcd6ip Is expressed in cloaca; epidermis; otic vesicle; and sensory system. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein).

NR:

description
PREDICTED: programmed cell death 6-interacting protein isoform X1

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245663.3 True 3296 mRNA 0.51 18 28906522 28921254
XM_007245664.3 False 3195 mRNA 0.51 18 28906608 28921254

Neighbor

gene id symbol gene type direction distance location
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding upstream 2420 28877570 ~ 28904102 (+)
clasp2 clasp2 coding upstream 32255 28808329 ~ 28874267 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511 coding upstream 103804 28784642 ~ 28802718 (+)
crtap crtap,LOC107593591,LOC107706152,LOC107670137,LOC107742876,LOC107591617,LOC106588754 coding upstream 151063 28747087 ~ 28755459 (+)
LOC103028750 LOC108424743 coding upstream 206742 28681071 ~ 28699780 (+)
arpp21 NA coding downstream 11062 28932316 ~ 28952514 (+)
LOC103031913 fabp3,LOC107591627,LOC108426441,LOC107742844,LOC107696578,LOC107669374 coding downstream 73630 28994884 ~ 28998485 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559 coding downstream 85301 29006555 ~ 29015003 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 99921 29021175 ~ 29034378 (+)
pum1 pum1,LOC107593563 coding downstream 118117 29039371 ~ 29064155 (+)
G200511 NA non-coding upstream 124488 28770134 ~ 28782034 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding upstream 161198 28703778 ~ 28745324 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 168196 28736851 ~ 28738326 (+)
G200488 NA non-coding upstream 177566 28726065 ~ 28728956 (+)
G200402 psmb4,LOC107731773,LOC107669568,LOC107591614,LOC107593590,LOC107696528 non-coding upstream 227360 28672884 ~ 28679162 (+)
G200628 NA non-coding downstream 97319 29018573 ~ 29019097 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding downstream 540907 29462161 ~ 29467527 (+)
G200785 NA non-coding downstream 563686 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 671766 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 714867 29636121 ~ 29640007 (+)
G200341 LOC108426039 other upstream 710324 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 918627 27978282 ~ 27987895 (+)
G200235 NA other upstream 1087872 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1166413 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1600936 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 606809 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 621494 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 2088672 31009926 ~ 31084633 (+)
G201018 NA other downstream 2091457 31012711 ~ 31015045 (+)
G201207 NA other downstream 3020948 31942202 ~ 31987057 (+)

Expression


Co-expression Network