LOC103035215


Basic Information

Item Value
gene id LOC103035215
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29138425 ~ 29149837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245678.3
GTGTGAACTGTCTGATTATCTGATCACTCTGCGCACGCATGTGTGTTCAGCATCAGGAAGTGTCAGTGTGGTTTGTAAGGCTGTGTATCTGAGTTGGTGCTTTTCAGACGCAGTTTGCATCCAGCGAAGAGAAGACAAAGAAATGGCTGGAACTCAGTCGCTCTGCTGCCACGTCCACACGGCCACGCGGGCATCTGCCATCTTCTACCTGGTTTATAATCTGCTGGTGGCCGTGGATCTGGCTATTGGAGCAATCTGGAATACTGACCCAATCACCATCTCCTACACCGACATGAAGCTCACCAGTGGCTATCGCGCCTTTGATATTGGCACCAACTTCATGGTGTTGGTTTTGATGTCCTTCTCCAGTGTGCTGGTAATGATAGCTCACCGTAAGGGGGCGTTGTGTGTTATGCCATTTATGCTGTTCATGTTTGTGGACGTGGCTCTGAGTCTGTTGTCGCTGTTCGCTGCTCCATGGGGTCTGCCTGGGACCCCCACCTACAGATCCGCCCTGCGACTGGCTTCAAATTTTAAAGGAGGGGTCAAGCTGGAAGGGGAGGAGTTAAGCCAAGTCACCATGATATTTGGAGTTCTGTTTGTGATGTACATACTGCTGAAGGTGTACATGATGCAGGTGTCAATGCGCTCTTTTTATGATCTGAGGGACAACTGGCCACCGCGTCCCGCGACCAAAAACACTGTGACGGTTAAGCTGCCCTCCTATGACGAGGCTCTGAAGATGAAAGATGATGCCCTGCCCCCGGCCTATCAGGAGCCTTAAAGCACGAAAGGAAAAGGCACCCACTCTTCTCTTGCACTTTCCGCACACACTGGCAGCTCCAATTAATATTTAAGCTCATTTAGTTACTAGTACAACTACATAAATTTACTTATTGTACTtccatacatatatacacacatctgTACACAGCCAAAGTCATATAGGTACAGTATATTATGCATATACTATTCTTACATATTCAGTTTACCtaagaaaaatatttcaatCAGCTACTAAAATACAAGATGAACAGatttataagtataagtatatcAAGTAAAGCTACTCCAGAGCTACTTATATGGAGtatagagcagctattattcCTGCAAGCTTTAAAACATCACAGGATGAATGTATAACTGAGCTGTCGTGATGCTACACATCAGACATATGtgattttttcagtattttgtccaGCTGCTTCAAGTATTTTCcgctattttctttttttgatggttAGACGGAGGGGGACAGAGATTAGGCTTTGAAAATGTGAAAGTGTGAGTTATGCAGTAAATAAGCAAACACATTTCCATACTCAAACAGAGAAGCTCCGGGAAATTCTTCAGCTTTAGTTGTTTCTCCAGACATTTTTAGGGTGTTTGTTTTGCGCCTGTTGGCAACACAAAAATAAACGTGTGAAAAATGTTGTGCttca

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245678.3 True 1445 mRNA 0.44 7 29138425 29149837

Neighbor

gene id symbol gene type direction distance location
LOC103034894 NA coding upstream 2076 29129082 ~ 29136349 (+)
sdc3 sdc3 coding upstream 10894 29070464 ~ 29127531 (+)
pum1 pum1,LOC107593563 coding upstream 74270 29039371 ~ 29064155 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding upstream 104047 29021175 ~ 29034378 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559 coding upstream 123422 29006555 ~ 29015003 (+)
matn1 matn1,LOC107696557,LOC107742840,LOC107697056,LOC107591630 coding downstream 2153 29151990 ~ 29161302 (+)
LOC103036251 LOC108426479,LOC108257059,LOC107696562,LOC107578469 coding downstream 12927 29162764 ~ 29172261 (+)
LOC103036565 fgr,yrk,LOC107696553,LOC107706197,LOC107593569,LOC107697055,LOC107742837 coding downstream 23687 29173524 ~ 29214941 (+)
ahdc1 ahdc1,LOC107682278 coding downstream 67943 29217780 ~ 29250749 (+)
LOC103037052 NA coding downstream 105559 29255396 ~ 29267228 (+)
G200628 NA non-coding upstream 119328 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 356391 28770134 ~ 28782034 (+)
G200482 LOC108426192,LOC108257078,LOC103472090,LOC106960294,LOC106931510,LOC103143289,LOC105893891,LOC107593550,LOC107706177,LOC107669544,LOC107696586 non-coding upstream 393101 28703778 ~ 28745324 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding downstream 312324 29462161 ~ 29467527 (+)
G200785 NA non-coding downstream 335103 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 443183 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 486284 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 524949 29674786 ~ 29744233 (+)
G200341 LOC108426039 other upstream 942227 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1150530 27978282 ~ 27987895 (+)
G200235 NA other upstream 1319775 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1398316 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 1832839 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 378226 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 392911 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1860089 31009926 ~ 31084633 (+)
G201018 NA other downstream 1862874 31012711 ~ 31015045 (+)
G201207 NA other downstream 2792365 31942202 ~ 31987057 (+)

Expression


Co-expression Network