LOC103043706


Basic Information

Item Value
gene id LOC103043706
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29479125 ~ 29483741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245710.3
TTTCCGCTTGGCGCTGCATTGTGGGATAATAGTGTCCGTTGCAGGCGCAGTAAAAACAGACCGAGGCTCTGCAGAGCGGgtatttcagtgtatttagTATAAGTGAGTTTATATTAGACACTGTAATCTATATTACACGATATCACCAGGCTGGTATCAGTGATTATCTCGGAATTGGGGCACTAATGGAGTCGGACCGGTCGGAGCACAGGCTGTATACCTCGGCCGAGAGCGAGTCCCTCACCATCTCCGCTGAAGTGGAGCTCACTGGACATGAAGTTGAACTCGGAGGAAATGAAATTGAAGTTGAACTGGCGGCGGACGAGGTAGAGCTGGTAGCTAATGAGGTAGAGCTCGTCAGAAACGAGGTTCAGCTCGTCAGAAACGAGATGCAgctggaggaagaagaagatgagAACCCCTTTCCTTATTTAGTAGACTACTTCGGCTTCAAGCACAGGAATGGTAACAGCTTCATTATGCAATGTAAGCTGTGTTTACCCATAGAGACCGAGCTGTCAGCCTATAAAAACTCCGCATCAAATCTGCGCAAACATGTGGAGAGGAAACATCCATCAAGGCTAAAGGACTTAAGTGACTATGTGGCATCACGGAAGCGAAACATGAATCCACCAGGAATCCCATGCAAGCAACCAAAAATGAGTGAAGTCATGATAGTGGGTGCAAACAGACGTGTGCCACAGGCAAAAGTTAACAAGCTAATAGTTAACTTCATTTGTGAGGGTCTTCATCCATTTTCTGTGGTTGAACAACCTTCTTTTAAAGAACTTTTACTGACACTGAATCCTCAATGCAAGGTCATGTCCAGTTTCAATCTCCAGGGCAGAATAGAAGGAGCTGCCACTCAAATGAAGCACACTTTATTGTCACACCTTAGTAAAGTCAGCTATGTTGCCACCACTACGGATTGTTGGACAGCACAACAGCAAAGTTACGTAATGGTCACAGCTCATTGGATAGATGAAGATACCTTGAGGAGGAAATCAGCTGCACTTGCTTTCAAGAGGCTGAAAGGGTCCCACACACTTGATGGGTTAGCAGGGGCCCTTGATGACATTTATTGTCAATATGGAATAAGGGAGAAAGTGGTAAGAATCACAACAGACAGCGGCTCAAACTTCATTAAACCACTCCGTTCACCTGGGGAGCAAAGCCAGCTTGAAGAAGCGGAGTCAGACTCAGACCAAGACACTTTTGATGATCCCAAAGCTGATTACCAGGACACATTCAGCATCCTGGAACAAGATAGCGATCTTGAGTACCAGCTTCCCCCATATCAAAGGTGTGCATGCCACTTGTTAACCTTAGTTGCCACAACCGATGCCACCATGGCAGAAGAGAAGAATGACACATACAAGCGGCTATCACGAGCAGCCTTTGGGAAATGCCAAACAATCTGGAATAAGTCAGGTCGGTCCTGTGTGGCAGCAGAAACTGTGGAACATAAAGGCAAACTCCAAGTCATCCGGCCAAATCCAACACAGTGGAACTCGATATACATGGCTGTGGAGAGACTCGTATTGATCATACAAGAGAAGGGGGAGGATGCTATCAGAAATATTTGTGAAAAATCAGAAGTGAAAATGCTGAAAACAGCTGAAATTGCTTTCCTTACCGAGTTCTGCACTGTGATGAAGCCTGTGGTGAAGGTTTTAAATATCCTTCAGTCTGAGACCAACACACACATGGGGTGGCTCCTGCCAGTGATCTTCCAACTACAAACAAAACTTAGCAGACTGGAGACATCCTCCAAGATGTGTCTGCCACTCATCAGAGCCATTCAGGAAGGAATCCAAAAGCGCTTTGGTAGGATGATGGAAGACCCTGAGTTGATTGCTGCATCAATTCTTTTGCCAAAGTTTAAGACCACCTGGACTGAGAGGGCTGACATCGTAGATGCAGGTCTGGCCTATGTGAGACAACACCTTGACCAGATGGCAGAAACTGGGGTGGAGCAGGTCAGACAACATTCATCAGATGAAGATGATTTCTTTTCCTCTATGAATTCAAGAAGGTCTCAAGGTGCAGTGGAGCTGGATGGGTACCTTGCCTGTTCCTCAAACAAGATAGATCTGCTGCGTGCATTTCCATACATCAGAAAACTTTCTCTTAAACTCAACGTTGGCCTGCCCGCCTCAGCCGCCTGTGAGcgtctttttaactgtactgggGTGCTGGCTACTGCAAAGCGAGCAAGGATGAACTCTACTGACTTTGAAAACCAACTACTGTTTAAACTTAACAGGAAGTTCAGGGATTAATGCCCTAAAGATGGACACCCCAACAAAGGGACTGTAATCTAGATATAGAATAGAACAGCATTCCACAGTTAATGCTACCTTAACTGGTTGTtatgtttcatatatatattggtgttgcactttaatttgtaaatatgctctttaataataaaaaaaaatcattataaaaaaacaa

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245710.3 True 2457 mRNA 0.45 4 29479125 29483741

Neighbor

gene id symbol gene type direction distance location
LOC103042153 LOC108426616 coding upstream 866 29468749 ~ 29478259 (+)
cap1 cap1,LOC107706206,LOC107697048 coding upstream 18494 29449616 ~ 29460631 (+)
kiaa0319l kiaa0319l,LOC106511748 coding upstream 31916 29423417 ~ 29447209 (+)
syce1 syce1 coding upstream 76842 29397398 ~ 29402283 (+)
LOC103039490 NA coding upstream 86672 29372764 ~ 29392453 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding downstream 12359 29496100 ~ 29500103 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding downstream 16620 29500361 ~ 29507353 (+)
LOC103045125 NA coding downstream 27962 29511703 ~ 29517460 (+)
rpl11 rpl11 coding downstream 35792 29519533 ~ 29523870 (+)
pithd1 pithd1,LOC107654704 coding downstream 70495 29554236 ~ 29557533 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 11598 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 460028 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 697091 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 740799 28736851 ~ 28738326 (+)
G200488 NA non-coding upstream 750169 28726065 ~ 28728956 (+)
G200785 NA non-coding downstream 1199 29484940 ~ 29485686 (+)
G200799 NA non-coding downstream 109279 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 152380 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 191045 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 389769 29873510 ~ 29878401 (+)
G200341 LOC108426039 other upstream 1282927 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1491230 27978282 ~ 27987895 (+)
G200235 NA other upstream 1660475 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1739016 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 2173539 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 44322 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 59007 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1526185 31009926 ~ 31084633 (+)
G201018 NA other downstream 1528970 31012711 ~ 31015045 (+)
G201207 NA other downstream 2458461 31942202 ~ 31987057 (+)

Expression


Co-expression Network