rpl11 (rpl11)


Basic Information

Item Value
gene id rpl11
gene name rpl11
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29519533 ~ 29523870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245713.3
GGGGAGACACTGCAGTATAAAAGATTTGCGCCGGAAGCGGATCGTCCTCTTCTAGTGATCAAACATGGCGGACCAGGGAGAGAAGAAGGAGAACCCCATGAGGGAGTTGCGCATCCGCAAACTCTGCCTGAATATCTGTGTAGGTGAAAGTGGTGACAGGCTGACCCGTGCCGCCAAGGTGCTGGAACAGCTGACAGGCCAGACTCCTGTCTTCTCCAAAGCCCGCTACACTGTTCGATCCTTTGGCATTCGTAGGAATGAAAAAATTGCAGTCCATTGCACTGTTCGTGGTGCCAAGGCTGAGGAGATCCTGGAGAAGGGATTGAAGGTGCGTGAGTATGAGCTGAGGAAGAACAACTTCTCCGACAGTGGAAACTTCGGCTTTGGTATCCAGGAGCACATCGATCTGGGCATCAAGTACGACCCCAGCATTGGCATCTATGGCTTGGACTTCTACGTGGTTCTTGGCAGACCTGGATTCAGCATTGCTgacaagaaaagaaagaggggCCGCATTGGCTTCAAGCACCGCATCCGCAAGGAGGAGGCCATGCGCTGGTTCCAACAGAAGTATGATGGCATCATCCTTCCTGGAAAGTAGAGGACCACCTTTTTGATTTTGtttaacaaacaataaaaacgaAAAGCCCA

Function

symbol description
rpl11 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including erythrocyte development; glucose homeostasis; and hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11).

NR:

description
PREDICTED: 60S ribosomal protein L11

GO:

id name namespace
GO:0034504 protein localization to nucleus biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042593 glucose homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02868 RP-L11e, RPL11; large subunit ribosomal protein L11e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245713.3 True 651 mRNA 0.51 6 29519533 29523870

Neighbor

gene id symbol gene type direction distance location
LOC103045125 NA coding upstream 2073 29511703 ~ 29517460 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding upstream 12180 29500361 ~ 29507353 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding upstream 19430 29496100 ~ 29500103 (+)
LOC103043706 NA coding upstream 35792 29479125 ~ 29483741 (+)
LOC103042153 LOC108426616 coding upstream 41274 29468749 ~ 29478259 (+)
pithd1 pithd1,LOC107654704 coding downstream 30366 29554236 ~ 29557533 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding downstream 46208 29570078 ~ 29600164 (+)
gatad1 gatad1,LOC102800149 coding downstream 77997 29601867 ~ 29604753 (+)
LOC103021940 LOC108426757 coding downstream 83199 29607069 ~ 29625468 (+)
LOC103021391 lrrc14b,LOC103021391 coding downstream 102417 29626287 ~ 29636049 (+)
G200785 NA non-coding upstream 33847 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 52006 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 500436 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 737499 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 781207 28736851 ~ 28738326 (+)
G200799 NA non-coding downstream 69150 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 112251 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 150916 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 349640 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 825495 30349365 ~ 30393273 (+)
G200341 LOC108426039 other upstream 1323335 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1531638 27978282 ~ 27987895 (+)
G200235 NA other upstream 1700883 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1779424 27634679 ~ 27740109 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other upstream 2213947 27304521 ~ 27305586 (+)
lypla2 lypla2,lypa2 other downstream 4193 29528063 ~ 29568075 (+)
eloa tceb3 other downstream 18878 29542748 ~ 29552884 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1486056 31009926 ~ 31084633 (+)
G201018 NA other downstream 1488841 31012711 ~ 31015045 (+)
G201207 NA other downstream 2418332 31942202 ~ 31987057 (+)

Expression


Co-expression Network