pithd1 (pithd1,LOC107654704)


Basic Information

Item Value
gene id pithd1
gene name pithd1,LOC107654704
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29554236 ~ 29557533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245719.3
TGTAAACTAATCCGCACTATTAGGGTGCATCGGCCGTTGTTGTGTGTTGACACATAAAGTGCGCTAGACTAGTTTGGGACGCTCCCAGAGTGGAAGTTAACATTGCGTATAAAGTAAGGGACGACAAACACTACTTTCTATTGGTCCTGCTGGTTTTGCTTTGGTCCAATCAGGGCTGCGTTTCCTATTATTTTGGGTTTGTACGTACAGTGTGATTTCTGCGTTATGCTCTGTGTATGTTGTAGTTTGTGGTGAAGGGAAGTAGCCgggtgtattagttagctataTTAGTTGTATTAGTAACTGAGTGTGTGGGGTTTCTGGGAGCTGTCTCGTGAGACAGTGAGGCACGTGCTATGTCTGGGCACGGGCACGGCGGCGGACACGGGCACGGCGGCGGCTGCTGTGAACACGAGCATGAGCCCGCAGAACGAGGCCTGGAGTACGGGCTGTACAGACGCATCGATATAGAGAAGCTGCAGTGCCTGAACGAGAGCCGAGACGGAGACGGGAAACTGGTGTTCAAGCCCTGGGATCAGCGCGCAGACCGGGAGAAGtttgtggAGAGTGACGCTGACGAGGAGCTTTTGTTCAATATCCCGTTTACCGGAAGTGTGAAGCTAAAAGGGATTATTATTTCCGGGGAGGATGATGAGTCCCATCCAGCAGAAATGAGGCTATACAAGAACATACCGCAGATGTCATTTGATGACACAAGCAGAGAGCCTGAGCAGGCATTTCGCCTCAACAGGGATCCACTAGCAGAACTTGAGTATCCAACTAAGATTGCCCGCTTTTCCAACGTAAATCACTTGTCCATTCACATTTCTCGAAACTTTGGAGCAGATTCCACTCGTGTTTACTACATTGGACTACGGGGAGAGTACACTGAGGCTCACAGACACGAGGTGACCATCTGTAACTACGAGGCAGCAGCAAATCCAGCAGATCATAAAGTGAAAACGATCACCCCACAAACACAATTTATATCATGACCCAAGATGCAAGACTGTGCCGTTAGATTGAAATGAATGTGTTTTGGGAACTGAGGTCTGTTTATGTAGACATGTTCCAAGGGAAATATtggtttgttttactttttgtgtgcaaataaatgttcaacgttaaataca

Function

symbol description
pithd1 Predicted to be involved in positive regulation of megakaryocyte differentiation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PITHD1 (PITH domain containing 1).

NR:

description
PITH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245719.3 True 1133 mRNA 0.47 6 29554236 29557533

Neighbor

gene id symbol gene type direction distance location
rpl11 rpl11 coding upstream 30366 29519533 ~ 29523870 (+)
LOC103045125 NA coding upstream 36776 29511703 ~ 29517460 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding upstream 46883 29500361 ~ 29507353 (+)
LOC103044018 eef1a1l1,LOC103044018,LOC108426629,LOC100526699 coding upstream 54133 29496100 ~ 29500103 (+)
LOC103043706 NA coding upstream 70495 29479125 ~ 29483741 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding downstream 12545 29570078 ~ 29600164 (+)
gatad1 gatad1,LOC102800149 coding downstream 44334 29601867 ~ 29604753 (+)
LOC103021940 LOC108426757 coding downstream 49536 29607069 ~ 29625468 (+)
LOC103021391 lrrc14b,LOC103021391 coding downstream 68754 29626287 ~ 29636049 (+)
LOC103022546 NA coding downstream 89235 29646768 ~ 29652821 (+)
G200785 NA non-coding upstream 68550 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 86709 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 535139 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 772202 28770134 ~ 28782034 (+)
G200490 LOC108426231,LOC107706181,LOC107593552,LOC108257175,LOC107742858,LOC107669520 non-coding upstream 815910 28736851 ~ 28738326 (+)
G200799 NA non-coding downstream 35487 29593020 ~ 29593537 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 78588 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 117253 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 315977 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 791832 30349365 ~ 30393273 (+)
eloa tceb3 other upstream 1352 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1358038 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1566341 27978282 ~ 27987895 (+)
G200235 NA other upstream 1735586 27815336 ~ 27818650 (+)
dync1i1 dync1i1,LOC107731605 other upstream 1814127 27634679 ~ 27740109 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1452393 31009926 ~ 31084633 (+)
G201018 NA other downstream 1455178 31012711 ~ 31015045 (+)
G201207 NA other downstream 2384669 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2496182 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2711765 32269298 ~ 32287803 (+)

Expression


Co-expression Network