gatad1 (gatad1,LOC102800149)


Basic Information

Item Value
gene id gatad1
gene name gatad1,LOC102800149
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29601867 ~ 29604753 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245723.3
gacgCCGTTGAACTCGGCCGGAAGAGGTAGCTCAGTTTGAGGACAAGGGGGGCTTTTATTCTGTAGATAATGGAGGACAGGGTTTGTTGTTGCAGTTCATTGttactaaaattattatttgcaGGGTTTAGACATTTTCTATTAATTTAGGAATAAAGTCTACAGACTGGGAGTGTTTTGTGTATTATTTAGCAGCGTTTAATTGCGCTGAGGAGCAAACAGCTAGCGTTAACTAGCTATATCTATCTTTAATACGTACTGTGCGGCGGTGAGACCTGAGAGCAGTaggttaacgttagctaggcgGGTACAGAGGGAAGATGCCGCTGGGAGTGAAGCCGAGCTGCGCGGTCTGCAAAACCAACTCCTCTTCTATGTGGAAAAAAGGAAACCAGGGAGAAATCCTGTGTAATAACTGCACTTCTAAAAGCAGTGTTGCTGGAGGACCCGGGATCTCCGTCTCTTCCACCACTCAGCAGAATAATGGCGGAGGAAAACAGTCTAAGCAAGAGATCCACAGAAGATCAGCACGACTGAGAAGTACTAAGTACAAGGCACCTGCATCTGAGAAGAAAGTCTCAACTAAGGGAAAAGGAAGGCGGCACATTTTTAAACTAAAGAATCCTATCAAAGCTCCAGAGTCTGTATCCACAATTATTACGTCAGAGTCAATCTTCTACAAGGGTGTTTATTATCAAATAGGAGATGTAATAAAGGTAACAGATGAAGAGGACGGTAAACCGTATTTTGCACAGATTCGTGGGTTTGTTCAGGACCAGTACTGTGAAAAGAGTGCCGCACTAACCTGGCTAATCCCCACTCAGTCTAGTCCAAGAGATCAGTTTGATCCAGGCTCTTACATTGTTGGTCCAGAAGAGGACTTACCAAGGAAAATGGAGTATCTTGAATTTGTCTGCCATGCTCCATCAGAATACTTTAAGTCAAGGAGTTGTCCTTTTCCAACAATACCCATTCGCCCAGAGAAAGGCTACATATGGACCCATATTGGACCTACACCTGCTGTTACAGTCAAGGAAACAGTTAGCTGCAGTTAACTGTTTTGTTCAGCCTTGTAACCTGAGACCAATATTCAAATACGGAATAGAAGAAAAGATTAATCAACGATTCGCAACCAGGCAAAATGATGGACATTTTTACGATCATCGTGAATTGAGTGTGAATTTCCACACCACTGCCAGAAACGAATGCTAACAACTCTACTCTGCTATACAACAAAGCAGATGTCCAGTTGCTTGGTACTGTAAAATGACAGTAGAGAGTGGAACCCTGTTGTCTCTGGGGACAGAAGACTTGATACTTAATTGAAGTATTAAACAGTTGGAACAGTATCTCTGTGCAGACTATCTTGATGAAAACAAtaatttgtaaatattgtaatgGACATATGTTtgttaacaaaaataataaaaaatatgaataaaa

Function

symbol description
gatad1 Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in I band and nucleus. Is expressed in several structures, including brain; gut; heart; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1).

NR:

description
PREDICTED: GATA zinc finger domain-containing protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23407 GATAD1; GATA zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245723.3 True 1443 mRNA 0.42 5 29601867 29604753

Neighbor

gene id symbol gene type direction distance location
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 1703 29570078 ~ 29600164 (+)
pithd1 pithd1,LOC107654704 coding upstream 44334 29554236 ~ 29557533 (+)
rpl11 rpl11 coding upstream 77997 29519533 ~ 29523870 (+)
LOC103045125 NA coding upstream 84407 29511703 ~ 29517460 (+)
LOC103044302 eef1a1l2,LOC103044302,LOC108426655,LOC108256978,LOC108426629,LOC103044018,LOC107589444 coding upstream 94514 29500361 ~ 29507353 (+)
LOC103021940 LOC108426757 coding downstream 2316 29607069 ~ 29625468 (+)
LOC103021391 lrrc14b,LOC103021391 coding downstream 21534 29626287 ~ 29636049 (+)
LOC103022546 NA coding downstream 42015 29646768 ~ 29652821 (+)
LOC111195487 NA coding downstream 643834 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1366650 30971403 ~ 30974511 (+)
G200799 NA non-coding upstream 8330 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 116181 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 134340 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 582770 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 819833 28770134 ~ 28782034 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 31368 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 70033 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 268757 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 744612 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 795493 30400246 ~ 30400752 (+)
lypla2 lypla2,lypa2 other upstream 33792 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 48983 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1405669 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1613972 27978282 ~ 27987895 (+)
G200235 NA other upstream 1783217 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1405173 31009926 ~ 31084633 (+)
G201018 NA other downstream 1407958 31012711 ~ 31015045 (+)
G201207 NA other downstream 2337449 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2448962 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2664545 32269298 ~ 32287803 (+)

Expression


Co-expression Network