LOC103021391 (lrrc14b,LOC103021391)


Basic Information

Item Value
gene id LOC103021391
gene name lrrc14b,LOC103021391
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29626287 ~ 29636049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245725.3
attgGCTAGATTCTTGTCAGGAGAGGCATCCTTCTACATTGGTGCCATGCAGACAGAGTTGAcgcagtgtgtggtgtatggtctgagcactgcaggTGTGAGTAAGCAGTGAAACTTTTGATGTTTTGTTAGAGAAAACTAACTTTGGTTAAAAAGACTGAATAGCTAAGACTAATAACACTGGCTGATGTTTAACTTCACTCACAGGATAGTACCTCAAACCTTACACAAGTGAGGGTGTTCCCAGGTCATCCCCTGAGATTTTACATGCTCTCCCAGGAATTTTGCCAGGCCAGTGTATTTGTACACTCCAAAGTGTTGCATTTATACTGTATGCATAAAGTACACAAAGTCAATGAAAGTCATGTCCATGAAATAAAGTCTCaaaaatggattaaaaacaaaatagctAATCCTTTTGTATGGGTACAGATGATAGCGTTGATAGATTGTTAATTATCTTTCTGTCTGAAAGTTAACTGCAGGCCAAATGTCTCAAATAGAACTTCTGCCTACGAGCCAGGTCCTGCCTGAGGCCATGAGACAGCTGCTTCTATAAATAACCCCCTCAACAACCACctcctcactctcacactccaGTACACAAATCCCCACATCCCATGCTCATACACATGCCGGCACGACGAAAGGTGAAAAAACAACTTTCAATAACCTTGCCAAAGGGTTGACAACATTCAGAAGAACTCAGGTAGAGCTCAGGAGTTTCTGAAGAGAAGCATGAAGAGCTTGAAGTTCTTGGCGGCTGAGGGCTTTGTTCGAAGTGGCCCGAGTGCTGGTAAGAACCTCAACTATCTGTCCTACAACCTGTTCCCAATCCTGTTTAAAGCCAGCTACCTGCAGGAGGCATCTGAGGTGCTCCATGACCTGGTTGAGTCGTGGCCTCTTACGGAGCTCAATCTGCGCAGATTGCTGGGCCGAACACCAGACTGCCTGGCTGACCTGACCTCCTGCACCTGCAGGCTCTGCCTCACAGCTGTGCTGACCGGTCTGAAGGACTACATCCTCCATGAGGCGAAAACATATGCCAAGGTCCTGCGTGTGGTGGACTTGACAGGCCTGCAGGACATTGAGCACCAGGCCTGCCCCTGCGGACGCACGCTGGGGCGCTGGGGCCGCACTGACCTGCTCACCCGTATGTGCTACGAGATCCTGGTGGCCATGCAGGCTGGACAGTCCGCTCCATCTGCCTTTGAGTTGGAGGTGGACGTCAGAATCGATGCTTTTGTCACAGCAAGGAACTATGAAGTGGTGGCTCAGGCCTTGCTGCTGCTAAGGCACTGTCCACTCAAGATGCGCTGTGTGGGTTTGCGCATGGACTCCCTGGTCCTCAAGAACCTCTTCTACCTGCTGAGGCTGGCTGAGCCCAAGGGCCTGATGAAGCTGGAGGTAGTGCACAACGTACGCCTGGAGGCTCCACATCTGGAGGTGATGTTCTCGCAGCTGCAGTTTCCTCAGCTGCGCTCACTCACTCTTCCGGCGCAGGCGATGAATGTTCGTAGACTGGGCCCAGATGATGAGGGCCTGCTGGGAGTGCTGGGAGAGCTGATGAGCAAGATTACAGAGCTGAGGGAGCTCTGCCTGGGCTTCTCCACACTCACGGGACATCTGCGTAAGCTGCTGAGTCCTCTCAGTACCCCACTGCAGTGTCTAGAACTGGGTAACTGCAGCCTCAGCACAGTGGACATGGCCTACCTGGCCAACAGTCTGCACAGTGAGTTCTTAGTAAGGCTGGACCTGAGTGGACATGTGGTGGCTGACCTCTTCCCCAACACCTTCCGTAAACTGCTGCACCGCTGCTCAGCCACACTCACCAGTCTCAATCTGGAGGAATGTGGCCTAGAGGACGAGAGCTTGGATCTCCTCACCCAGTCCCTCACACCCTGCCACGGCCTGCAGGAACTCAAGATCCTGGGGAACCCACTGAGCACTGGAGCCCTGCGCCAGCTCTTCAACATGCTGGCTCAAAACTACCCAGCTCTCAGGTATATCGAACTGCCAGTTCCTCGAGACTGCTACTCTGAAGATGTGACCTACCCTCTGGATGATTCTGTGCTTCTGAGTTATGATCAGGAGAAGTTCCTCCAGGCCAGAGCGGAACTGAAAGGCATTCTGGAGAGTGCTGGGAAAGGACATGTAGAGGTATGCACACCACTGTTCGGTGCCTACGATCCCGACATCCATGAGACAAGCAACGAGCTGGGATGCTCCATCGTGCACTCATTTAATAATGTTATAGGGAACTTCATAAGCACTGTGACTAACGTCAATGAGCGGAGAGAGCAAAGCATGAAGCACTGATGGAGTTTTGTTATTGGATATTATGCAAATGCTTTAGTCTATcataaataaagaacaataaataGTATTGTGTTTTAGTATATGTATACTGCAAATTTGTAAGGCTGTTTGTGTTGCAGAACATCAGAATTTGTGATTTTGCATGACACGCTGTATAATATGAATGCGTCAGtgaattgtgaaaaaaaagctgCTGTTAAACGTCTAAACTGTGCAATATATAACTAGATTTAAATTACTTAAGCTATATCATAAATGTAATTGTGTCActtgaaaaaaatggatttcCAGTACAACGTAACAGGAAAAGAAATtgatgtatatatgtacatatccAGTCAAGCATAACATTGTgatccttgtttctacacccagtATGCATtattcagctccactgagcatataaGACAATTTTTAATTCTATAATTACTGACTATAGTCCTGaacctgtttctctgcatattttattatcctcctttccgTTCTTCAATAATCAGGACCTCACAGAATAGACCACCACACAGCAGCTATTAGTTTGGGGGGGGTTCATTCTTAGCAGtactcagcagtgctgctggagtttttaaacacggTGTCCTCTAACTGTCTCACTTAGACACTCCTTCTTATAGCTGCTTCCCGTTGTAGaagtaaaatcagagacagaaactctgaatctgttgctcaACTGATGGGCTATTCACAACCCAGCAATGACAATGAAGtgtttaaacagagaaaaacagaaatagaagTACTAGTGTCTGTCATTACAGAACTATAACATTTCTCCTATATACTCAGTGGAGATGAAAAGTACAAATAAGCATGGCTGTCTAAGAAGTTCCAGTGAGAAACACTAATGGTTAAATTTAGTAGTTGGATTTGACTGCATGAAAGACAAAGTCTAGAATTAATGTTTTGTATGATAGCACAGATTGATTTAACGAGGGCAACCAAGGTTTGTACAAAATATGTTCTTTGTAGGAACTACATTACTctgttctttaaacaaaaaataaaagtctgatACAAAT

Function

symbol description
lrrc14b Predicted to act upstream of or within several processes, including negative regulation of apoptotic process; negative regulation of transcription, DNA-templated; and positive regulation of cell population proliferation. Predicted to be active in cytoplasm. Orthologous to human LRRC14B (leucine rich repeat containing 14B).

NR:

description
leucine-rich repeat-containing protein 14B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245725.3 True 3356 mRNA 0.46 3 29626287 29636049

Neighbor

gene id symbol gene type direction distance location
LOC103021940 LOC108426757 coding upstream 819 29607069 ~ 29625468 (+)
gatad1 gatad1,LOC102800149 coding upstream 21534 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 26123 29570078 ~ 29600164 (+)
pithd1 pithd1,LOC107654704 coding upstream 68754 29554236 ~ 29557533 (+)
rpl11 rpl11 coding upstream 102417 29519533 ~ 29523870 (+)
LOC103022546 NA coding downstream 10719 29646768 ~ 29652821 (+)
LOC111195487 NA coding downstream 612538 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1335354 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 1342701 30978750 ~ 30985844 (+)
stmnd1 NA coding downstream 1419971 31056020 ~ 31062482 (+)
G200799 NA non-coding upstream 32750 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 140601 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 158760 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 607190 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 844253 28770134 ~ 28782034 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 72 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 38737 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 237461 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 713316 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 764197 30400246 ~ 30400752 (+)
lypla2 lypla2,lypa2 other upstream 58212 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 73403 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1430089 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1638392 27978282 ~ 27987895 (+)
G200235 NA other upstream 1807637 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1373877 31009926 ~ 31084633 (+)
G201018 NA other downstream 1376662 31012711 ~ 31015045 (+)
G201207 NA other downstream 2306153 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2417666 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2633249 32269298 ~ 32287803 (+)

Expression


Co-expression Network