LOC103021940 (LOC108426757)


Basic Information

Item Value
gene id LOC103021940
gene name LOC108426757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29607069 ~ 29625468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245726.3
CACTCGGAGACTCGACTCGCGTTTCTTCCTCAAAGATAAAGCGAATCCAGACATTCCCACAGAGGATTCCTCCAAACTTCACCCAGACTGCAGTTTAACTGACCCTATGGATACACGCACCGGGAATATGGCCTGTTCAGCCTCTCTCTGCCAATCAAGGCAAAAAGGAGCTCTCAGTTTTCCATAAGAGGATAATTAAAGCGGGATAATTGGAATTTCAGAACACAGGCAGCATGGGAACTTTACAGTCGagacatgCGTGTAAACGAAGAGAGAGTCCAGAGGgTGGCACCTTTGCAACAAGCCCTCTTACCTTCCACAGGGAGTCAGACACCGCCAGAGACAAGCAGAATGTGTGTGGTGCTGAGTTAAAGGATGAGAAATTCCTGGACCCTGACTGCCCTCTGGAGGTAATCCTGCCACCAGAGAGACCAGCTGAACACCAAAGTCACAAACTCACATCAGAGAGCGGAGATGCCCACCGGaggactgcaaaaaaaaatGAGCTGGAATGCAACATGCCTGCGACAGAGGAAAATCGCCAAGAGTGGGTTTTTACATTATACGACTTCGACAACAGCGGCAGAGTGACCAAGGAGGATATGTCCAGTCTGATGCATACCATCTATGAGGTGGTGGAGGCTTCAGTCAAACAGTCTGCATTGAGCAACAGCAAAACACTGCGGGTCAAACTGACAGTCACACCTTCATCTAGTGGCAGCAGAAAAGATCGAGATGTTGGGCTTTCTCTGAACAAGCGGGAGCAGCTGGAGGagacccatccctcacacatcAGGATACAGAGTCCAGATCCTGCGGTCAGTTCAGAGAAGAAGCTTTACCCTGTGGATGAGAACACTGAGCGCAGAAACCACTATTTAGACCTGGCTGGGATTGAAAACTACACGTCCAGATTTGAAGCAGATAACACTGTTCAGTCTCCAGCGGAGGAGCAGAATCAGGATGGCCTGACCCATGTGGCTCGTTCTACTTACCATCGGCGTCCACAACCCGACATCAGCAGCCCAGGGAAGTCCAGCGGTCGTGGAATCTCCTTTCTCAAGTCCCTGCGGAGCCGCAGTAAGTCCATGGGGGCAAGTGGAGGCACTGGCAAACCAAGCAGGCTCCATGGGTATCATCCCGTCAGCTGGTGCAGCCCCCCTCagccccagcagcagcagcctccgcCTCAGCACCAGTACAGCCACAGTAAGCGAGCCCGTTCCAGGCCAAGAGAAGCTCTTTCACCATCTATAGCCCACCCCAACCCGGACTGGGACTTGCAGCCTGGAACAGGAGCTTCTCCTGCAGGGTTTGTGCCTGTAGCTCAGAGGCACGAGCACCACCACCTCCAtgaacaccaccaccatcatcaccaccaccactactactCCTCCTGACTGCATTCTCTTCTAGAAAGAGAAATATGAAAATAGGAGCATTTTTAAGGGCTGATCTGCACAGACATTTGAGACACTTTCTACAAAACGCCTCACAAGATCAGCCTCtcctaaaaaaacagacaaaagacAGTATTCTCCCCATGTGAAGGAATGATAAAGTTTGTGAACTTTCTTAATCTATGCAACCATTGGTGCTAACAGAAAACAACTCTATTTTActttcttctctgtgttcagataaTCAATAGATGCTGACAAATCCCTTAAAAAGGAGATATAGTGCCCCCATGTGATTGTAAATTGAGTTGTCCAAAATGTAATATAGAGAATGTGAGGTTTTATATCATTGGTCACCATTCCTACTCTTGGAGATCTACTCTTCTGCAGAATTCAGCTTCAAAATAAAACTGTCTCTACGTAATCCAGCTAATCAATGTCTTTATAAGTGCCTAATTGAATGAGAGGGTTAGGGCAGGCTAGGTTAGGAGGTGAAAGTTGCAGGAAGGTAGATCTTCAGGAGGATTGATGACCATGAAAACTATTCAGTATGATACCACTGACGTTTAAGTCAACGATGCCCTACAGACTGATCATGTTTTCCTCAGGATTTCTATACAAATAACCACtcattttatacaatatatattatgtcTCATGTATGTTAAAAATGCACTTGTGCATTAAAAGGAGTATATCACATTATTTATAA

Function

NR:

description
PREDICTED: protein naked cuticle homolog 2-like isoform X3

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245726.3 True 2112 mRNA 0.47 10 29607069 29625468

Neighbor

gene id symbol gene type direction distance location
gatad1 gatad1,LOC102800149 coding upstream 2316 29601867 ~ 29604753 (+)
LOC103046858 ankib1,LOC107742824,LOC107706216,LOC107654707,LOC107696581 coding upstream 6905 29570078 ~ 29600164 (+)
pithd1 pithd1,LOC107654704 coding upstream 49536 29554236 ~ 29557533 (+)
rpl11 rpl11 coding upstream 83199 29519533 ~ 29523870 (+)
LOC103045125 NA coding upstream 89609 29511703 ~ 29517460 (+)
LOC103021391 lrrc14b,LOC103021391 coding downstream 819 29626287 ~ 29636049 (+)
LOC103022546 NA coding downstream 21300 29646768 ~ 29652821 (+)
LOC111195487 NA coding downstream 623119 30248587 ~ 30249855 (+)
utp23 utp23 coding downstream 1345935 30971403 ~ 30974511 (+)
aard LOC108424810 coding downstream 1353282 30978750 ~ 30985844 (+)
G200799 NA non-coding upstream 13532 29593020 ~ 29593537 (+)
G200785 NA non-coding upstream 121383 29484940 ~ 29485686 (+)
G200780 ppt1,LOC107697049,LOC107706207,LOC107589449,LOC107591677 non-coding upstream 139542 29462161 ~ 29467527 (+)
G200628 NA non-coding upstream 587972 29018573 ~ 29019097 (+)
G200511 NA non-coding upstream 825035 28770134 ~ 28782034 (+)
G200803 LOC108426791,LOC101073009,LOC107696579,LOC107591646,LOC101165157 non-coding downstream 10653 29636121 ~ 29640007 (+)
LOC111195537 NA non-coding downstream 49318 29674786 ~ 29744233 (+)
G200840 NA non-coding downstream 248042 29873510 ~ 29878401 (+)
G200864 NA non-coding downstream 723897 30349365 ~ 30393273 (+)
G200869 NA non-coding downstream 774778 30400246 ~ 30400752 (+)
lypla2 lypla2,lypa2 other upstream 38994 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 54185 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 1410871 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 1619174 27978282 ~ 27987895 (+)
G200235 NA other upstream 1788419 27815336 ~ 27818650 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other downstream 1384458 31009926 ~ 31084633 (+)
G201018 NA other downstream 1387243 31012711 ~ 31015045 (+)
G201207 NA other downstream 2316734 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 2428247 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 2643830 32269298 ~ 32287803 (+)

Expression


Co-expression Network