Gene
RNA
| Item | Value |
|---|---|
| gene id | utp23 |
| gene name | utp23 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035919.1 |
| NCBI id | CM008322.1 |
| chromosome length | 38085671 |
| location | 30971403 ~ 30974511 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| utp23 | Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; lens placode; optic vesicle; presumptive neural retina; and segmental plate. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component). |
| description |
|---|
| rRNA-processing protein UTP23 homolog |
| id | name | namespace |
|---|---|---|
| GO:0032040 | small-subunit processome | cellular_component |
| id | description |
|---|---|
| K14773 | UTP23; U3 small nucleolar RNA-associated protein 23 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007245735.3 | True | 1164 | mRNA | 0.48 | 3 | 30971403 | 30974511 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC111195487 | NA | coding | upstream | 721548 | 30248587 ~ 30249855 (+) |
| LOC103022546 | NA | coding | upstream | 1318582 | 29646768 ~ 29652821 (+) |
| LOC103021391 | lrrc14b,LOC103021391 | coding | upstream | 1335354 | 29626287 ~ 29636049 (+) |
| LOC103021940 | LOC108426757 | coding | upstream | 1345935 | 29607069 ~ 29625468 (+) |
| gatad1 | gatad1,LOC102800149 | coding | upstream | 1366650 | 29601867 ~ 29604753 (+) |
| aard | LOC108424810 | coding | downstream | 4239 | 30978750 ~ 30985844 (+) |
| stmnd1 | NA | coding | downstream | 81509 | 31056020 ~ 31062482 (+) |
| cap2 | cap2,LOC107706226 | coding | downstream | 123388 | 31097899 ~ 31133970 (+) |
| vps28 | vps28,LOC107592928,LOC107696523 | coding | downstream | 167327 | 31141838 ~ 31149221 (+) |
| mapk15 | mapk15,LOC107696521 | coding | downstream | 176349 | 31150860 ~ 31162358 (+) |
| G201010 | NA | non-coding | upstream | 161177 | 30809995 ~ 30810226 (+) |
| G201008 | NA | non-coding | upstream | 223201 | 30748003 ~ 30748202 (+) |
| G201006 | NA | non-coding | upstream | 227953 | 30742759 ~ 30743450 (+) |
| G201004 | NA | non-coding | upstream | 230473 | 30740678 ~ 30740930 (+) |
| G200971 | trps1 | non-coding | upstream | 482899 | 30484658 ~ 30488504 (+) |
| G201030 | NA | non-coding | downstream | 31121 | 31005632 ~ 31005925 (+) |
| G201019 | nup153,LOC107706220 | non-coding | downstream | 44093 | 31018604 ~ 31029889 (+) |
| G201135 | NA | non-coding | downstream | 285434 | 31259945 ~ 31262960 (+) |
| G201163 | NA | non-coding | downstream | 466934 | 31441445 ~ 31451756 (+) |
| G201167 | NA | non-coding | downstream | 573838 | 31548349 ~ 31631753 (+) |
| lypla2 | lypla2,lypa2 | other | upstream | 1403328 | 29528063 ~ 29568075 (+) |
| eloa | tceb3 | other | upstream | 1418519 | 29542748 ~ 29552884 (+) |
| G200341 | LOC108426039 | other | upstream | 2775205 | 28193574 ~ 28196198 (+) |
| LOC103032101 | NA | other | upstream | 2983508 | 27978282 ~ 27987895 (+) |
| G200235 | NA | other | upstream | 3152753 | 27815336 ~ 27818650 (+) |
| rbm24 | rbm24,rbm24a,LOC107754275,LOC107592929 | other | downstream | 35415 | 31009926 ~ 31084633 (+) |
| G201018 | NA | other | downstream | 38200 | 31012711 ~ 31015045 (+) |
| G201207 | NA | other | downstream | 967691 | 31942202 ~ 31987057 (+) |
| tpmt | tpmt | other | downstream | 1079204 | 32053715 ~ 32067640 (+) |
| LOC103043810 | ago4,LOC106511154,LOC103043810 | other | downstream | 1294787 | 32269298 ~ 32287803 (+) |
