stmnd1


Basic Information

Item Value
gene id stmnd1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31056020 ~ 31062482 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245743.3
TTGTAGCAACGAGCCTTAGCGACGCAGAGAGTCCGTGGAGACGGGTTTCCCGGGGTCCTGGTGGAGTACAGGAATGCAGCACTTCTGTAAAACTTCTCAAGCACCAGTCTGTGGATAGCAGCTGCTGACACATCCCAGCATTACCAGTACACAGTGGACATGGGGTGTGGGAGCTCCAAAATTACTGTAGTTGAGCCGGTTAAACCCAGCAGCCTGGAGGAGAATGAGTGTATAGTGGTGTCTGGAGGAGCTCGCGGTGACTCTGCTGTGTCAAAGAAGACTACTGACAGTGGACTGGGTCTGGATGCCGGAGAGACCACCGGCCTGCCTGGGGCAGTTCCCAGGATACTCCCACCTTTAAGAGCTCAAAGTCCAGGATTGGCCCATGACAGCCAGAGGGCGGAGTCCAGCGCCATCCTGGAGGAGCTGCTAAATCAGGGAATCATCCCAGCCCATCCTAAAGTGGCAGGCAGTGGGGAGGCCTACAACATCAtgCTGGATGATGCAGACAGGCCGAAGAGGAGACCCCCGCCTCGTCTAGAGTCACTAAAGGTTCATAAAGAACAAGAGCTCACGAGAAAGGAAGACATTGAGGAGAAGATGAGACAagtagaggagaggagaaagGTGCGAGAGGACGAGCTGCGGACCAGATTGAGGGCCAAGTCTGCACGGCCTCGTGGAGCTGCTCCAGTGGGGGCTGAGGTTCCTGAGGATGTTCCTGACGTTCCCCACCTCCCTCCTGCACCCAAAGAGCATCACACAAGCAGCAGTTCAGAAGAATCGAATGATAGGATACTGACTGACTCTCCAGAGCTGGAGAACGACTCAACATTTCAGCAGCCTGAAGATACTGACGGGTTTTTCTAGCAGAGGGCtttttccagaccaccacaatgAAGCAGGGCCAACAGACCTTATTACTATTACttacaatacatatataaagtatatatatatatatatatatatatatgcggcACAATATAGGTATAGATGGGAGAGGGGGATGCTCACAAGCATCAGGGTTTTTTGCACTTGCACTTTATGCTTTATACTTTACACTATTTAGCTTTTTAATACTGGACAACAGTCCCATAATTAAAGGGACATTGATGAAGCTTATCATTCTTTACTACCTTTATTCTTTGTTATATTCcaaagaaataagaaatcagAGCATCTCTCTTAGACAGCTGTTAATTAATCACAGTGATTAttcttaaatgtaaaataatacgTTTATCtgcttatatacaatatatgtcCAAGTGTTGGTGTTGGACAACCTTGCTAATGAACGCAGCCAGTTACTTTATGTTGCACCCCTTGCTGACATGTATAttgaaatacacacaaacacacacacaccttgtctAATtccagtaaagagcagtaaggagagcagataaacatcccagctaacagagaacattataagTTCCTTTAGCAATGTAtggaaaaggttccaggaaggttagcttGTAACATTCTGAAAAAATCTgcagggttcatacggtcatgaaaaacctagaaaagtcatggaaattccaggcctggataagttttggaaaaataaaataaaaaatacccaaaaagttttggaaaaaaatgatggaaatttggtctactaTCCTTTGTGTTTCCGCTTATCAatgaagaaaatctattttgagctaccaAATACATCAGTTAATTCAGTAAATTTGCCCCACACAATGGAGCTTTCACGATCTGacacacattatattattaaaaattgtctGTCAAcattattagtttcagtttagtatAACCAattactataatcaatt

Function

NR:

description
PREDICTED: stathmin domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245743.3 True 1814 mRNA 0.44 5 31056020 31062482

Neighbor

gene id symbol gene type direction distance location
aard LOC108424810 coding upstream 70176 30978750 ~ 30985844 (+)
utp23 utp23 coding upstream 81509 30971403 ~ 30974511 (+)
LOC111195487 NA coding upstream 806165 30248587 ~ 30249855 (+)
LOC103022546 NA coding upstream 1403199 29646768 ~ 29652821 (+)
LOC103021391 lrrc14b,LOC103021391 coding upstream 1419971 29626287 ~ 29636049 (+)
cap2 cap2,LOC107706226 coding downstream 35417 31097899 ~ 31133970 (+)
vps28 vps28,LOC107592928,LOC107696523 coding downstream 79356 31141838 ~ 31149221 (+)
mapk15 mapk15,LOC107696521 coding downstream 88378 31150860 ~ 31162358 (+)
grina grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 coding downstream 101744 31164226 ~ 31187101 (+)
LOC103030437 slc30a8,rprd1a,LOC107754284,LOC106570487 coding downstream 129274 31191756 ~ 31218918 (+)
G201019 nup153,LOC107706220 non-coding upstream 26131 31018604 ~ 31029889 (+)
G201030 NA non-coding upstream 50095 31005632 ~ 31005925 (+)
G201010 NA non-coding upstream 245794 30809995 ~ 30810226 (+)
G201008 NA non-coding upstream 307818 30748003 ~ 30748202 (+)
G201006 NA non-coding upstream 312570 30742759 ~ 30743450 (+)
G201135 NA non-coding downstream 197463 31259945 ~ 31262960 (+)
G201163 NA non-coding downstream 378963 31441445 ~ 31451756 (+)
G201167 NA non-coding downstream 485867 31548349 ~ 31631753 (+)
G201206 NA non-coding downstream 877019 31939501 ~ 31939940 (+)
G201225 NA non-coding downstream 950596 32013078 ~ 32065707 (+)
G201018 NA other upstream 40975 31012711 ~ 31015045 (+)
lypla2 lypla2,lypa2 other upstream 1487945 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 1503136 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2859822 28193574 ~ 28196198 (+)
LOC103032101 NA other upstream 3068125 27978282 ~ 27987895 (+)
G201207 NA other downstream 879720 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 991233 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 1206816 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 1861046 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 1911838 32974320 ~ 32977910 (+)

Expression


Co-expression Network