vps28 (vps28,LOC107592928,LOC107696523)


Basic Information

Item Value
gene id vps28
gene name vps28,LOC107592928,LOC107696523
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31141838 ~ 31149221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245747.3
GATGAAACACTGTGCGACGGGCACTGACGTAAACACGGCCGGGGTGAGGAGGAGCTCCGGGTTCGGGCTTTTATTCgcttttctctctgtttatataatattttctgcTCCGACACCCGGATTATTCTTCTCTACAGCTGATTAAACAGCGGGATAACCGGTTGGATAATTAACTTGGGGTTGGCACGATGTTCCACGGAATACCAGCGTCTGGAGGGATGGGGGGAGCTCCTGCCAATAAGCCAGAATTATATGAGGAGGTGAAGCTGTATAAAAatgcaagagaaagagaaaaGTACGACAACATGGCAGAACTGTTTGCTGTGGTAAAGACACTCCAAGCCTTAGAGAAAGCGTACATCAAGGACTGTGTTACCCCTAATGAatacaCAGGTGCCTGCTCAAGATTGCTTGTCCAGTATAAAGCAGCTTTCAAGCAGGTCCAAGGGTCAGATGTTGGTTCCATTGATGACTTCTGTAGGAAATACAGGCTCGACTGTCCCCTGGCAATGGAGAGAATCAAAGAAGACCGGCCAATTACTATAAAGGATGACAAAGGCAACCTGAATCGCTGCATTGCGGATATCGTATCTCTCTTCATCACAGTGATGGACAAACTGAGACTGGAGATTCGAGCCATGGATGAGATCCAGCCAGACCTTAGGGAGCTGATGGAGACCATGAACAGGATGAGCAACATGCCACCAGATTCAGAGGCTAAGGACAAAGTCAATCTCTGGTTGACCACTCTGAGCAGCATGTCTGCCTCTGACGAGCTGGATGACTCCCAAGTGCGTCAGATGCTGTTTGATCTGGAGTCTGCCTACAACGCCTTCAACCGGTTCTTGCACTCCTCCTAAACTATGGACCATGAGAACTGTTCTACTCCACTCTGCCCAGCTTTCTCCCTCTGTCACCCAGTTCCTGATCCCCGTGCTCTCAGCGGGAAGCCTCGTCTTCAATACAGAACTCTAATGTTTGGGAATCTGATGTAGACACTTTAAGATCCAGCTGGGCTTTAGTGTGGAGTATCTCTGTCTATTAACCTTTAACCTTTGTCACCTACATAGCATTGCTAACTATAATTTCAGATATTTGTTATACTGTGACTTTGCTTAAATCTGTTTGAAACTGCTGCAGAGAGAAACCTTGtgcgtttttttcccccagaagGAACAGTGCTTGCTTAGGCCATAGAATCAAATCAGCAGACAGTGGATGGTTTTAAGTCTCACTAAAAttatttggttacatttttgGATTTGTCATTATTGAATGATGTCAGATTTAGAATTAGATTTTAAAGAACACATCAAAATTGATATGGTATcaatcctgtttttttctgcctacatgtaaaatgttttagatatatatttttaaaaggggATTACAATACATTTTGTATGATTTAGGTCATTAcgtgaagaaaaaaagatgtgAATAAGTTGTTTCGAGTGATTTGGTGTGAAATGTTACTGGAGATAAGCCTACTGCCACGGATTTGTTTACAGCGGTGgtgatttcaaaataaaaataaatattttgcctTAACACACTACATGTACTGTATGAAATGCATTTTAGGCCACAAACATTTCCTTCTTACTGTTAAACAATGTCTCTGGCATAATTTAGATGCATGACATTAGCCTACTGTTCTTATTCAGAGTGACATACATTTGAATCATGTCACAAGTAGCAGTCTCGCCCGATATATAAACACTTTAATGGGTGAAGTGTATTGGGCTTGCCTGACCAGGAAATCAAACCCTGGTCCACCACTGGAACGTTACCAACCTCTGCTTCAGGCATCATGTATATGTAACATTAATCACACCAAATCACTGCATCAACTGTTTTACatcttttaattctttaatgaTGCAAAACATTCAAGAAATCGGTGCATTTTCCCTTTAATCAACATGATTCTCAAAGGCCTGCACACTTGCTATGCAGGCATATTTAGAAAAGCCGCAAATACGCACTCCATATTTTTGGTTTGCCTGAATCTTGCATTATCTGTAGCAATTTCAGGTGCTCTTTAAATATTAGCCATGTTTATACTTAAGTTTTAGCACCCAAATTTTTTAACTGGCTCTTTGCAGAGAAGGGGGAAAAATCATAGGgagggaattttttttttgttttttttttttttttttt

Function

symbol description
vps28 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

NR:

description
vacuolar protein sorting-associated protein 28 homolog isoform X1

GO: NA

KEGG:

id description
K12184 VPS28; ESCRT-I complex subunit VPS28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245747.3 True 2169 mRNA 0.41 10 31141838 31149221

Neighbor

gene id symbol gene type direction distance location
cap2 cap2,LOC107706226 coding upstream 7868 31097899 ~ 31133970 (+)
stmnd1 NA coding upstream 79356 31056020 ~ 31062482 (+)
aard LOC108424810 coding upstream 155994 30978750 ~ 30985844 (+)
utp23 utp23 coding upstream 167327 30971403 ~ 30974511 (+)
LOC111195487 NA coding upstream 891983 30248587 ~ 30249855 (+)
mapk15 mapk15,LOC107696521 coding downstream 1639 31150860 ~ 31162358 (+)
grina grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 coding downstream 15005 31164226 ~ 31187101 (+)
LOC103030437 slc30a8,rprd1a,LOC107754284,LOC106570487 coding downstream 42535 31191756 ~ 31218918 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 coding downstream 75223 31224444 ~ 31257722 (+)
trnaq-uug_6 NA coding downstream 281326 31430547 ~ 31430618 (+)
G201019 nup153,LOC107706220 non-coding upstream 111949 31018604 ~ 31029889 (+)
G201030 NA non-coding upstream 135913 31005632 ~ 31005925 (+)
G201010 NA non-coding upstream 331612 30809995 ~ 30810226 (+)
G201008 NA non-coding upstream 393636 30748003 ~ 30748202 (+)
G201006 NA non-coding upstream 398388 30742759 ~ 30743450 (+)
G201135 NA non-coding downstream 110724 31259945 ~ 31262960 (+)
G201163 NA non-coding downstream 292224 31441445 ~ 31451756 (+)
G201167 NA non-coding downstream 399128 31548349 ~ 31631753 (+)
G201206 NA non-coding downstream 790280 31939501 ~ 31939940 (+)
G201225 NA non-coding downstream 863857 32013078 ~ 32065707 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 57205 31009926 ~ 31084633 (+)
G201018 NA other upstream 126793 31012711 ~ 31015045 (+)
lypla2 lypla2,lypa2 other upstream 1573763 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 1588954 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2945640 28193574 ~ 28196198 (+)
G201207 NA other downstream 792981 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 904494 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 1120077 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 1774307 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 1825099 32974320 ~ 32977910 (+)

Expression


Co-expression Network