LOC103030437 (slc30a8,rprd1a,LOC107754284,LOC106570487)


Basic Information

Item Value
gene id LOC103030437
gene name slc30a8,rprd1a,LOC107754284,LOC106570487
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31191756 ~ 31218918 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245752.3
gttggacctggcaaccctgctgtGAGAGGGGAATGGGCTGCCAGCTATagcaggagctgcaggagctgtgtggttttttttttccgagGGTTTCTGTTTGGTAGGTGAAGAGCTGGGTGTTTGCTGTGGGGAGCAGCATTCAGTAATATTTTAGATAAGGTAATTTAGGAGGAAAATGTCAGCTTTCTCCGAGTCAGCTTTGGAGAAAAAATTGTCAGAACTTAGCAATTCTCAGCAGAGCGTCCAGACCCTGTCTCTGTGGTTAATCCACCACAGAAAACACTCCAAAACCATCGTCAGAGTTTGGTTTAGCGAGCTGAGGAAAGccCAGGTTCCTCgcaaactgaccttcctttatCTTGCAAACGATGTCATCCAGAACAGTAAGAGGAAAGGACCAGAGTTTACAGATGACTTTGCCCCAGTCATTATTGATGCCTTTAAACATGTTTCTAGTGAAGGAGAAGATGGCTGTAAGAAGCAGTTGGATCGGGTTCTGTCCATCTGGCAAGAGAGAGCAGTGTATGAGAATGATGTGCTGGAAAAACTCACAGAGGTGTTACATGGAGAAAAGAAGGCCAAGAAGCGGCCATATGAGCAGATTAAAGCACGCGATGAAGACTTTGCCTCTCGAAGCTCCCCAGCAGAACCTCCACAGACAGCAGATTTGATCCGGGCATTGCAGGAGCTGGAGAATGCTGCGTCGAGCGACTCGGCTCTGCGTCAGAGGATTTCTGCCTTACCCCCTGAGGTGCAGGACTCCTCCCTGCTGCACAGAGTCACAGATAAGGAGTCTGGAGAACGGCTGtccaggctggtggaggaggcTTGCATGATGCTAGCGGACTACAGCGGGCGTCTGGCGGCCGAGATTGATGACCGGCGACAGCTCACACGACTACTGAGTCTCTTTCTACAGAGCCAGCGGGATGGCCTAGCCAAGAACGAACAGAAACTAGAAGAGTACAAACGGAAACTGGCACAGGTGTCGCAGGTGCGCAAGGAGCTCCGATCTCGCCTCAGTAGCCTTCCGGACCTTTCCCGGCTTCCCAGTGTAACGGGGAGCCATGTCCGCCTGCCCTCTTCTGGTGATCTCTACAGCCCATCTGACAAAACTGCGAATATGTTTAAAAGCGACCCGGAGAAGGCTCTGCTGGTGAAGGACAAAGCTGCCAACATGTACACCATCACCATGGAAAGTGTGTCTTCAGGGGACATGGTGCTGAAGGACAGTAAGCACTGTCATGACAGCAGTCATGCCTTTGaggacagagagaaggagaagaaagtgGCCAGGAAGCGTCTCTACATCGTCTCGGTGGTCTGTCTGGTCTTCATGGTGGGAGAGATCTTAGgtGGGTACTTTGCTGGTAGTCTGGCTGTGATGACGGATGCTGCCCACCTGCTGGTGGACTttaccagtttcatcatcagcCTGTGCTCCCTGTGGCTGTCATCCAGgcctgctacacacacactcaactacGGCTGGCATCGAGCAGAGATCCTGGGCGCTCTCCTTTCCGTCTTCACCATCTGGTTGGTGACTGGTGTGCTGGTGTACTTGGCAGTAGAGCGTCTTATCAGTGATGATTATGAAATCGAGGGCACTGTCATGCTCATCACCTCTGGCTGCGCTGTGCTGGCCAACATCATAATGGCTCTCACTTTGCACCAGTCAGGACATGGCCACAGTCATGGTGGCCTCAGCTCTCAAGGACATGGTCACAGCCATAGTGGTGCCCACAGCCATGAGAAGAAGAATGGTCACTCCCATGCATATGCTAATGGTGACTCCCACAATCCGGAAAACAAAACGACTGGAAAGAAGACTCAGGAGAATGCCAGTGTGAGGGCAGCCTTCGTGCATGTGATCGGTGACCTTCTGCAGAGCATCAGTGTACTCGTTAGCGCCCTCATCATCTTCTTCAGGCCTGAGTACAAGATGGCAGATCCAATCTGCACCTTCCTGTTCTCACTGTTCGTCCTGGGCACCACCTTCACCATCATGAGGGACATCCTGGTGGTCCTAATGGAAGgaACTCCAGCAGGTGTGGACTATAGGGAGGTGAGAGAGCGACTGCTCTCTGTGAAGGGAGTAAAAGCAGTCCACAACCTGCACATCTGGGCCTTGACCATGAACCAGGCTGTTCTCTCTGCCCATGTGGCTATAGACGACGCCACAGAGCCGCAGGTTGTGCTGAGAGAGATCACCCAGTCCTGCTTCACCACTTACAGCTTCCACTCCGTCACCATCCAGCTGGAGCAACAGGAGGACCAGAGGCCTGACTGCACCCTCTGTCAGGACCCCAAAAACTGAAGCCCCCCTGCTCAAATTCACCCTCCCCCAACCCTCGATCCAAGAAAGACAAGAAACCAGTGCAGCACAGTTAGGATCTTATGCAATGCATGCTTCACTTTACATGTTTGCCAGTCAGACCAGAGACTCAGTGGGCTGCTCAGTCTTGGACCTTGGACCACTCTGTTTCTTGCTTGAGTTTATCAGTGGGAGATTTATGCCAAAGTCTTATGATTACCAGGTTACAAAACAGGAGATTAGGGAGGTTGTGCCTTATCCTACTTGGAAaataacacatacacaaaatTACAGAAACATTGTACTGTATTAccatatgtattatttactgtatgtatttttattgaaatatgtaatattgtccCTCACTAGAGGGGATCATTTGTTTTAGAAgagtattttgagtttaaatgcatttacactCATTGCCAAAAATATAATGCACCAAGAAGGAGTTGTTGGAATAAAGTGAAACTTTTTATGTTT

Function

symbol description
slc30a8 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within glucose homeostasis and type B pancreatic cell development. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to several human genes including RPRD1A (regulation of nuclear pre-mRNA domain containing 1A).
rprd1a Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme.

NR:

description
PREDICTED: zinc transporter 8

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245752.3 True 2803 mRNA 0.50 15 31191756 31218918

Neighbor

gene id symbol gene type direction distance location
grina grina,LOC107654720,LOC107706230,LOC101487737,LOC102211845 coding upstream 4655 31164226 ~ 31187101 (+)
mapk15 mapk15,LOC107696521 coding upstream 29398 31150860 ~ 31162358 (+)
vps28 vps28,LOC107592928,LOC107696523 coding upstream 42535 31141838 ~ 31149221 (+)
cap2 cap2,LOC107706226 coding upstream 57786 31097899 ~ 31133970 (+)
stmnd1 NA coding upstream 129274 31056020 ~ 31062482 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 coding downstream 5526 31224444 ~ 31257722 (+)
trnaq-uug_6 NA coding downstream 211629 31430547 ~ 31430618 (+)
trnar-acg_20 NA coding downstream 212033 31430951 ~ 31431023 (+)
trnaq-cug_18 NA coding downstream 212323 31431241 ~ 31431312 (+)
trnaq-cug_19 NA coding downstream 212653 31431571 ~ 31431642 (+)
G201019 nup153,LOC107706220 non-coding upstream 161867 31018604 ~ 31029889 (+)
G201030 NA non-coding upstream 185831 31005632 ~ 31005925 (+)
G201010 NA non-coding upstream 381530 30809995 ~ 30810226 (+)
G201008 NA non-coding upstream 443554 30748003 ~ 30748202 (+)
G201006 NA non-coding upstream 448306 30742759 ~ 30743450 (+)
G201135 NA non-coding downstream 41027 31259945 ~ 31262960 (+)
G201163 NA non-coding downstream 222527 31441445 ~ 31451756 (+)
G201167 NA non-coding downstream 329431 31548349 ~ 31631753 (+)
G201206 NA non-coding downstream 720583 31939501 ~ 31939940 (+)
G201225 NA non-coding downstream 794160 32013078 ~ 32065707 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 107123 31009926 ~ 31084633 (+)
G201018 NA other upstream 176711 31012711 ~ 31015045 (+)
lypla2 lypla2,lypa2 other upstream 1623681 29528063 ~ 29568075 (+)
eloa tceb3 other upstream 1638872 29542748 ~ 29552884 (+)
G200341 LOC108426039 other upstream 2995558 28193574 ~ 28196198 (+)
G201207 NA other downstream 723284 31942202 ~ 31987057 (+)
tpmt tpmt other downstream 834797 32053715 ~ 32067640 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 1050380 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 1704610 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 1755402 32974320 ~ 32977910 (+)

Expression


Co-expression Network