mrm2 (mrm2)


Basic Information

Item Value
gene id mrm2
gene name mrm2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35811037 ~ 35818586 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247794.3
AGTGTTTACTCTCCCCTGTACAGGCTCTGTGGTGCAGCATGGTGTTGTATGGGAGTCACATTGGGTTCAGTATGGAGGGTAAATAGTGATAAGGAGCGTAAATAGTGATGTTTAGGCCCGTGTGTCTGTGTACATCTCGGATCCACAGCTCCGCCGCGCTGCTGAAGAAGGCTCCGCTGAAGCTGAAGGGCCGCAGCGGGGCTGAGCAGCGCTGGCTGGTCCGGCAGCTCAGCGACCCGTTCGTTAAAGCCGCTCAGACCCAGAACTACCGCTGCCGGAGCGCCTTCAAACTGCGGGAGATAGACGATCAGTACCGGCTGCTGAGCCCCGGACTCAGCGTTATAGACTGCGGAGCTGCGCCCGGAGCCTGGAGCCAAGTAGCCGTGCAGAGAGTCAACTCAGCCGGGGAGCGGCCAGATGTACCCCGAGGAAGCGTCATTGGAATAGATCTGCTGTACATTGCCCCCCTGGAAGGTGCACACTTCCTGTGCAATCAGGATATCACCCATCCCGCCACTCATGCAGAGCTGCAGCGGCTCCTTCCTCAAGCCTATGCTGATGTCATCCTCAGTGACATGGCTCCCAACGCCAGCGGGCTCAGGGAGCTCGACCACGAGAGACTAGTGAGCATGTGTCTCTCACTCCTGGAGCTGGCTGACAGGGTCCTGCGGCCGGGGGGCTCCCTGGTGTGTAAGTACTGGGACGGAGCGCTCGCCCATAAGCTCCGGGACGGTCTCGCTCGGGTCTTTCGGGACGTCAAGACTGTGAAACCCAAAGCGAGCAGGAAAGATTCGTCCGAGCTTTATTTCCTGGCCAGGACATTCAGGAGGACGTAGTGCTGGTTTTCCATCTACTCATTAATAAAAAgataatttaattcatttttattggaCACCATGGCCCCTGTGGTAGAACTACGGTCTGAAATATTGGCCTTTTTAGACTATTTAGACCTGTCATTGTCACAGCTGATTGGTTTGAAATCATTAAAGAGGACATTTCAATAATTAACTTTGAA

Function

symbol description
mrm2 Predicted to enable rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in RNA methylation. Predicted to act upstream of or within methylation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome. Orthologous to human MRM2 (mitochondrial rRNA methyltransferase 2).

NR:

description
rRNA methyltransferase 2, mitochondrial-like

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K02427 rlmE, rrmJ, ftsJ; 23S rRNA (uridine2552-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247794.3 True 1018 mRNA 0.54 2 35811037 35818586

Neighbor

gene id symbol gene type direction distance location
snx8 snx8,LOC107758331,LOC107592787 coding upstream 12037 35775028 ~ 35799000 (+)
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 195226 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 424952 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 438436 35356753 ~ 35372601 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 474958 35263070 ~ 35336079 (+)
zfand2a zfand2a,LOC107568938 coding downstream 747621 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 833248 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 1059237 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 1133321 36951907 ~ 36973852 (+)
LOC103045472 LOC108433148,LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC105013234,LOC106607346 coding downstream 1192109 37010695 ~ 37025525 (+)
G202175 nudt1,LOC107592807,LOC107674605,LOC107758325 non-coding upstream 1612 35805564 ~ 35809425 (+)
G202174 NA non-coding upstream 15894 35794260 ~ 35795143 (+)
G202171 NA non-coding upstream 37118 35773299 ~ 35773919 (+)
G202163 NA non-coding upstream 130836 35651071 ~ 35680201 (+)
G202149 NA non-coding upstream 288267 35522542 ~ 35522770 (+)
G202178 NA non-coding downstream 828 35819414 ~ 35820135 (+)
G202208 NA non-coding downstream 12851 35831437 ~ 35898406 (+)
G202214 NA non-coding downstream 57760 35876346 ~ 35903753 (+)
G202234 NA non-coding downstream 145212 35963798 ~ 35964045 (+)
G202238 NA non-coding downstream 214854 36033440 ~ 36033716 (+)
LOC111195488 NA other upstream 686419 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1996051 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2536130 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2833127 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2883118 32923528 ~ 32927919 (+)
G202336 NA other downstream 770862 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1164737 36983323 ~ 36993332 (+)

Expression


Co-expression Network