snx8 (snx8,LOC107758331,LOC107592787)


Basic Information

Item Value
gene id snx8
gene name snx8,LOC107758331,LOC107592787
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35775028 ~ 35799000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247796.3
TTCCAACTCCAGGCAGTAGAAAAGTGCTGTTTTCCCTTTTCCTTCAGGAAATCACATGGAGGTGTTGGTGCACTCACATGACAGCCTGGACTATGGAAGGAGAGCTGAATGAAGGATCAGTCCCTCTGTATTATCGAGAAGTGCATCAGGCTATCAGCAGCAGGACAGACGAACGAGTGCAAATCGATGTGTTCCACAGACTTCTCAACAGAACCGATCTCTCGCTCAACCAGCAGAACCAGATTACAGAACATGTCGATAATGGCGACGGCTTCCTAAGTAAGGTATCCTTCTACAAGGCCTTGGCTCTGATTGCGCTTGCTCAACAAGGAAAGCACCCCAGCCCTAAGCTCCTGGAGCACTGCATACAAGAGTTTCCTAAGCCCCAGCTAGGAGAGCCAAAGGACCTGCAGAACTTGAGGATGCAGCCGGTCCAGGAGAACCCTCTGCTCCTGTCTCTGACCCTGGCCAACCTGCTGAGCAAGGACACGATAAAGGTGGACCTCATTCCAGAGAAGAAAGGCCTGTTCCTCAAACATGTGGAATATCAGGTCACCAGTCAGCGTTTCAAAATTTCAGTCTATCGGCGCTACAGTGACTTCGACGTCTTCCACGAGCTTCTGCTGCAGAGGTACGCCTACAGGACGGTCCCGGCCTTACCTCCCAAAAGAGTGCTGAAAGGAGTCTTGGCTTCAGTGTCAGAGCGAGAGTTCATCGAGGGACGGCGGCGTGGTTTGGGCAGGTTCCTGAACCTCGTGGCGAGGCATCCTTTCTTTTCTGAGGACGAGCTCGTCAAGACGTTCCTGACTTTCAGCGGTTCAGATGTCCAAACGAAGCTGCGGGACTCTTTCAAGAGAATGGGGGACGAGTTCATGACGTGCAGATACGCAACACAAGCCAAGGAATATCTTCCTGCGGATATCCAGTCCTGCTTCTCGGCGAGCAGAGAACTGATCAGAAACATCCACAACAGCTTCCAGAAGCTCAGAGAACGAGCAGAGAAGATGGCAGAGCGCTCCAAGGAGAACGCCACAGATCTGCTCATGTTTGGGAAGGAGCTGAGTGCTCTGGGTTCTGATTCCTCACCAGTTCCTGTACTGGGATTATCCAAGAGCATGTGGGGGGATCTGAGGCACTCTCTGCACGGCCTGTCCTCAGAGTTCTCCTCACTGGCAGATAAAGCAGCCGAACAGGGAAGAAGAGAGGAGGACGACGTGGTGGAGAAACTGCATCTCTTTTTAGATTTGCTGCAGTCGTACAAAGATCTGTGTGAGCGGCATGAGAAGGGCGTCCTGCACGAGCACCAGAAAGCCCTGCAGAAGTACAGCGTCATGAAGAGGCAGATGATGAGCGCAACTGTGCAGTCCAAAGAACAGGTTTCTGTGGAGCAGCTGGAGTCTCGCATTGTCCAGCAAGAGAACGCCATTCAGACCATGGAGCTGCGCAACTACTTCTCGCTGTTCTGCCTGCACCAGGAGAGCCAGCTCATCTTCACTTATCTTCCCATCACTTCAGACATCCTGGGGGCCTTCGTCAACTCCCAAGTGCAGGGGCACAGAGAGaTGGGCCAGGTCTGGAACAACCTTCACTCCAAGCTGAGTGGTCTTTTTATTGGTAAAAATGGACTTCAGTCTCCTCCCCTCTCTCCAAAATAATCCTCTGCTTGCTGTGAGACAGGTTAAAAAGCAAGCTGGACCCTGACTGGACTTCCAGAAGCTTTTCAGGCAATTCCTTTCTTTATTAAGCTCCAAAAACACTACTATGCATTTCATACTCACTGTGGTTTTGCTCTGATTTCTACGATGATTCAGTTACTATCATTGATTTTTCACGCTGAGCTTCACGCAGAGCTGAGCTGCCCGACTGACAGCAGACTGTGTCGGAAACTGTAATCACAGAGCTGCCTGTTAAGTGACAAGAGAGACGTCGGCCATTGTTTGGACTCCTGTTggctaaaaatattattttaacagaGCTAAGGATGATGAGCAGACATGTCACACATTTTCTAATCACGCATATTATACAGCATCATGCTGAGAGCATTCTGTAGATCATATTTGGTGTTATTAATGCAATATAAGTGCAAATCTGTGGcccattttttctttta
>XM_007247797.3
TCGTTCCAACTCCAGGCAGTAGAAAAGTGCTGTTTTCCCTTTTCCTTCAGGAAATCACATGGAGGTGTTGGTGCACTCACATGACAGCCTGGACTATGGAAGGAGAGCTGAATGAAGGATCAGTCCCTCTGTATTATCGAGAAGTGCATCAGGCTATCAGCAGCAGGACAGACGAACGAGTGCAAATCGATGTGTTCCACAGACTTCTCAACAGAACCGATCTCTCGCTCAACCAGCAGAACCAGATTACAGAACATGTCGATAATGGCGACGGCTTCCTAAGTAAGGTATCCTTCTACAAGGCCTTGGCTCTGATTGCGCTTGCTCAACAAGGAAAGCACCCCAGCCCTAAGCTCCTGGAGCACTGCATACAAGAGTTTCCTAAGCCCCAGCTAGGAGAGCCAAAGGACCTGCAGAACTTGAGGATGCAGCCGGTCCAGGAGAACCCTCTGCTCCTGTCTCTGACCCTGGCCAACCTGCTGAGCAAGGACACGATAAAGGTGGACCTCATTCCAGAGAAGAAAGGCCTGTTCCTCAAACATGTGGAATATCAGGTCACCAGTCAGCGTTTCAAAATTTCAGTCTATCGGCGCTACAGTGACTTCGACGTCTTCCACGAGCTTCTGCTGCAGAGGTACGCCTACAGGACGGTCCCGGCCTTACCTCCCAAAAGAGTGCTGAAAGGAGTCTTGGCTTCAGTGTCAGAGCGAGAGTTCATCGAGGGACGGCGGCGTGGTTTGGGCAGGTTCCTGAACCTCGTGGCGAGGCATCCTTTCTTTTCTGAGGACGAGCTCGTCAAGACGTTCCTGACTTTCAGCGGTTCAGATGTCCAAACGAAGCTGCGGGACTCTTTCAAGAGAATGGGGGACGAGTTCATGACGTGCAGATACGCAACACAAGCCAAGGAATATCTTCCTGCGGATATCCAGTCCTGCTTCTCGGCGAGCAGAGAACTGATCAGAAACATCCACAACAGCTTCCAGAAGCTCAGAGAACGAGCAGAGAAGATGGCAGAGCGCTCCAAGGAGAACGCCACAGATCTGCTCATGTTTGGGAAGGAGCTGAGTGCTCTGGGTTCTGATTCCTCACCAGTTCCTGTACTGGGATTATCCAAGAGCATGTGGGGGGATCTGAGGCACTCTCTGCACGGCCTGTCCTCAGAGTTCTCCTCACTGGCAGATAAAGCAGCCGAACAGGGAAGAAGAGAGGAGGACGACGTGGTGGAGAAACTGCATCTCTTTTTAGATTTGCTGCAGTCGTACAAAGATCTGTGTGAGCGGCATGAGAAGGGCGTCCTGCACGAGCACCAGAAAGCCCTGCAGAAGTACAGCGTCATGAAGAGGCAGATGATGAGCGCAACTGTGCAGTCCAAAGAACAGGTTTCTGTGGAGCAGCTGGAGTCTCGCATTGTCCAGCAAGAGAACGCCATTCAGACCATGGAGCTGCGCAACTACTTCTCGCTGTTCTGCCTGCACCAGGAGAGCCAGCTCATCTTCACTTATCTTCCCATCACTTCAGACATCCTGGGGGCCTTCGTCAACTCCCAAGTGCAGGGGCACAGAGAGGCTCGTATGTGTGTGGTGTCACAGCATGcagttccctgattggctggacgcagcgcgGTGGctggattcatttgaataaagttagGCTCTGCTGAACTTCTTTGCCGGAGGGCCGGGCTGCGCTCAatgcaacccagcatgcaccgcTGCATGCGGCGCCTCTCTCCATGAGTGGGATGCGTCGGGgcttaagtgccagtggacacgcACTGTTAAGGGCATTTCCATTCAAAATGCctaatgaaaatacacattaaatatactttttctgtatttccataaagtgtatttttatgcaatatgctttaaatgaaacgtgttgatagaaaatacagtatatgtactGCCATTAAATACTgcctaaagtgcactttagtgtcaGTGTCATTAAGGTTTTTACgaaatatgtgcatcaatacacaaAGTAGTATATTTACAAGATACTTTAAGTGTATTGATGTTTGAAAAAACTCATACTTAAATCTAAGTTTgcagaatttatacataaaaagcattcaaaagcacaacctaatgcttgtacgttgtatttaaatgtagctt

Function

symbol description
snx8 Enables identical protein binding activity and phosphatidylinositol binding activity. Involved in early endosome to Golgi transport and intracellular protein transport. Located in early endosome membrane. Colocalizes with retromer complex.

NR:

description
PREDICTED: sorting nexin-8

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005509 calcium ion binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247796.3 False 2113 mRNA 0.50 13 35775031 35799000
XM_007247797.3 True 2126 mRNA 0.49 13 35775028 35796580

Neighbor

gene id symbol gene type direction distance location
lfng lfng,LOC107674646,LOC107703400,LOC107758333 coding upstream 159217 35601601 ~ 35615811 (+)
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 388943 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 402427 35356753 ~ 35372601 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 438949 35263070 ~ 35336079 (+)
card11 card11,LOC107592484 coding upstream 537394 35144275 ~ 35237634 (+)
mrm2 mrm2 coding downstream 12037 35811037 ~ 35818586 (+)
zfand2a zfand2a,LOC107568938 coding downstream 767207 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 852834 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 1078823 36877823 ~ 36877894 (+)
zc3h7a zc3h7a coding downstream 1152907 36951907 ~ 36973852 (+)
G202171 NA non-coding upstream 1109 35773299 ~ 35773919 (+)
G202163 NA non-coding upstream 94827 35651071 ~ 35680201 (+)
G202149 NA non-coding upstream 252258 35522542 ~ 35522770 (+)
G202147 NA non-coding upstream 264116 35510703 ~ 35510912 (+)
G202127 NA non-coding upstream 333467 35441286 ~ 35441561 (+)
G202175 nudt1,LOC107592807,LOC107674605,LOC107758325 non-coding downstream 6564 35805564 ~ 35809425 (+)
G202178 NA non-coding downstream 20414 35819414 ~ 35820135 (+)
G202208 NA non-coding downstream 32437 35831437 ~ 35898406 (+)
G202214 NA non-coding downstream 77346 35876346 ~ 35903753 (+)
G202234 NA non-coding downstream 164798 35963798 ~ 35964045 (+)
LOC111195488 NA other upstream 650410 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1960042 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2500121 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2797118 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2847109 32923528 ~ 32927919 (+)
G202336 NA other downstream 790448 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1184323 36983323 ~ 36993332 (+)

Expression


Co-expression Network