lfng (lfng,LOC107674646,LOC107703400,LOC107758333)


Basic Information

Item Value
gene id lfng
gene name lfng,LOC107674646,LOC107703400,LOC107758333
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35601601 ~ 35615811 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247803.3
ACCACGAGTTTTTCCAGCGCTCAGCCGGGACGGTCACGGCGCATGAGTGTGTTAGTTCTCGGAGGCACGTTGAGTTTGATGCAGTGCCCGTTAGATTAGGGTTAAACATGTTGAAGAGCCACAGTAAAAAGACGCTGCTCTCCGCAGCCGGAGCCTCGCTCGCCTGCCTTGCGCTCGTGCTGGTGCTCGCCCAGCGCCAGCGGAGCGCGACCGAGGGCGCACCGGGGGACCGGGAGAGGGAGGTCGGCGTGCGCTCGCTCCAGAGCCTGGTGGACACCGGAGCGGAGGACGCGGCGCAGAGCGAGGATCAGTCCGGGGAGAAGAGGGGGTTCTCGGCGTACTTCTCCAAGTTGACGCGCAGCAGGAGGGAAGCGGAGCGGCCTGGGGGCGCACGGGGGTCCGCGGCGACCAGCCCACCCCCAGCCGAGCTCATCAGCAGTGATGATATCTTCATCGCGGTTAAAACCACCAAGAAGTTCCATAAGTCCaggctggagctgctgctggacACTTGGATTTCGAGGAACAAGCAGCAGACGTACATCTTCACAGATGGCGAGGATGAGGAGCTGAAGCAGAAAATGGGAAGCCACGTCATCAACACCAACTGCTCTGCTGCCCACAGTCGCCAGGCCCTGTCCTGCAAGATGGCCGTGGAGTATGACAAGTTCATTGAGTCAAGCAAAAAGTGGTTCTGCCACGTGGATGATGACAACTACGTGAATGTGAAGACCCTGGTCCAGCTGCTGTCTCTGTACCCTCACACTCAGGACATGTACATAGGCAAACCCAGCCTGGACCGGCCCATCGAGGCCACAGAGAGACTCGGGGACAACAAGATGCGTCCTGTTAATTTCTGGTTTGCCACCGGAGGAGCAGGCTTCTGTGTGAGCCGTGGTCTGGCTCTGAAGATGAGCCCCTGGGCGAGTGGTGGTCATTTCATGAACACTGCGGAGAAGATCCGCCTCCCAGACGACTGCACTGTCGGCTACATCATCGAGTCCGTTCTGGGGGTTCCGCTGACCCGCAGCAACCTGTTCCACTCACATCTGGAGAACCTGCAACAGGTGTCCACATCAGAAGTACATAAACAGATTACGTTGAGTTATGGAATGTTTGAGAACAAGAGGAATATCATCAACATGAAAGGGGCTTTCTCAGTTGAGGAGGACCCATCCAGgtttAAGTCAGTGCACTGTCTGCTGTATCCCGACACGCCGTGGTGTCCTCCTCAGGTTGCTTTTTAAGGCGACCAGCTCCTCTCTTGTATCCTCGTCTCAGCTGTGCCTCGGTATCTGACAGGCACCTGGGACCGGTGTGGTTTTAGCCGTGTACTGCTGTGTTTTCGCTGCAGTGTAACTCGGCCTCTTATGGTTTTTACTGGGCTGCTGTGCGGCCCGCCTTCGGACGCTTCCTTCCTGCCTGGTGCGGGGGCTTCCTGTCTGAACCCCCTGGGTGGGGCCCAGGGGGCTCTGCAGGAACAGGCTCTCGGCACCAGGCTTCGCAGGCAATCAGCTGTGCTTTACGTCCTTCATGTTGCTTGTATTCCATTTGCAATTCTCAtagaatgtgtgttttattatgtgTCCAAGCCGTTTTTGCCAGCTTTACATGCTtagtttctatatttttttgccCCTTTTCCAAAAGTGATTTGGGACAAGACTCCGGGGTCCCTTGATTCAGAAATCAGGAGTCCCAAGATTCAGGGGTCCATGATTCATTAGCTATTGATTCAGAAGTCAGGATTCCATGATTCAGGAGTTCCTTGATTCTGGAGTCCATGATTCAAGTTTCAGGACTTCTTTGATTCAGGGGTTCCTTGATTCAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTTAAGAGTCAAGGGGTTCCTTGATTTAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTCAAGATTCAGGGGTTCCTTGATTTAAGATTCAAGGGGTTCCTTGATTTAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTCAAGAGTCAGGAGTTCCTTGATTTAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTCAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTTAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAAGTTCCTTGATTCAAGATTCAAGGGGTTCCTTGATTTAAAGAGTCAGGAGTTCCTTGATTTAAGAGTCAGGAGTTCTTGATTCAAGAGTCAGAAATTCCTTGATTCAAGAGTCAGGAGTTCCTTGATTCAAGAGTCAGGAGTTTCTTGATTCAAGAGTCAGAAATTCCTTGATTCAAGATTCAGGAGTTCCTTGATTCAAGAGTCAGAAATTCCTTGATTCAAGAGTCAGAAATTCCTTGATTTATGAGTCAGGAGTTCCTTGATTCATGAGTGAGGAGTTCCTTGATTCAAGAGTCAGGAGTTTCTTGATTCGAGAGTCCGGAGTTCCTTGATTCAAGAGTTAGGAGTTCCTTGATTCAAGAGTTAGGAGTTCCTTGATTCAAGAGTCAGGATTTCCTTGATTCAAGAGTCAGGATTTCCTTGATTCAAGAGTCAGAAGTTCCTTGATTCAAGAGTCAGGAGTTCCTTGATTCAAGAGTCAGGAGTTCCTTGATTCAAGAGTCAGGAGTTCCTTGATTCAAGAGTCAGGAGTTTCTTGATTCAAGAGTCAGAAATTCCTTGATTCAAGAGTCAGGGGTTCCTTGTTTCAGGAGTCAGGAGTCCATGATTCAGGAGTCCTCCCTACTCAGGTTCAATGGGCTTGACGggggatttattttttaaaatattggtgcttttatagattttaatttgtttttcattaagtTTCAAAGACTCCGGACAAAAATTACGAAATGAaggttaattaaataattctgtTGTTTAGTTTCATTTTCAGTTCCTAGTATTTTAGCTTCATTATTGCTTTTATGTATAAAGATTCTGATAATTTAATAGGATTATAATAATTTGTGCTGGCAATAGGCAATTTTCCTCATGTGCCTGCAGGTTTTTTTGAATCTGTGGTATATCAGGATAGAGCACTTTTTTATTCTTACATTGCTGTTCTGAAAATGATGACTATGATGGGACTCAAAGCTGTGTGATGTAACATAAGCCCCCTCCCCGAGCctttagattatattatatttaatgccATTACTTGCATTCAAACAATCTTGGCATATAGTTTTAATGAGATTTTTGATCTGGTCTGATCTGATCTCATCTTGTTAGCTTTGTTATGAGAGATATTTAACGTAGGGATGCACCGAAATGACCATTTTCTGGCCAAAACCGAAGAAAATCAAGCCTTTAATTCATGTTTTAATAAGTAtgcaatttttattttcaccattgcatacagtttttttttttgcttaaaaaaacaaaaaagcaattacaagtgtacaatttacaaaatatttattgaacaatgaacattttaaacaagccatcaaaccataaTACTGTTTGGTATAAATTgtcttcacatttttttttttctagatattttttgccattatttcggttgccaaatattcggtgcatccctaatttaATGGGAAATTGCACAGCTTGATATATTTAAGCTGCTTGTTGCTCTTGAGAAGTGCCGTTCTCCTGCTCATGTTTACACATGCTTTGTGAACAGAACTGGCAGTGCATCTTTCACTAACCACTTGCTATAATGTGCACAATATGGCAGCTACAATATATGGAATAGACCTATTGATCTTTCTGATGGTTATAATGGTTCTGCCATGTTTCAGCTGACAGGAGTCACCTGGTTCCTTCCCCCGAGCAACAGCAGTGTCCATTATATACAGAGTCTTTCTCTGTGTGGAGATGACCCACATTGGGTCGACTGTATCTTATTTAAagcagtatttatttactgtgccttttttaaatgattgtatttgtacattattttgtttagatGGTATATGCTTTTTTTCCACCTGTGAATCAGACTTGGTTCTGATGACTCTAATGTTTTGTATTGCTTTGAATTTTGTGCTAATGGCTGTAATTTATACTCCAGTATCTGGATTCTCCCATTGTTCACATGCCTGTCTCTCAGGGATCAGTGTCCTGACTAAGTTACCACAGGTGCTTCTGTGGTAACTGTGCTTCTAGCTTTCAAATAAAACAGCATACTCGCTGAGAAACTTTA

Function

symbol description
lfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within fin regeneration; hypochord development; and negative regulation of neuron differentiation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including blastodisc; central nervous system; germ ring; neural plate; and sensory system. Human ortholog(s) of this gene implicated in spondylocostal dysostosis. Orthologous to human LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

NR:

description
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0055016 hypochord development biological_process
GO:0007389 pattern specification process biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247803.3 True 4259 mRNA 0.45 8 35601601 35615811

Neighbor

gene id symbol gene type direction distance location
chst12 chst12,chst12a,LOC107758335,LOC107674724 coding upstream 215516 35377651 ~ 35386085 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding upstream 229000 35356753 ~ 35372601 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding upstream 265522 35263070 ~ 35336079 (+)
card11 card11,LOC107592484 coding upstream 363967 35144275 ~ 35237634 (+)
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding upstream 1279742 34286087 ~ 34321859 (+)
snx8 snx8,LOC107758331,LOC107592787 coding downstream 159217 35775028 ~ 35799000 (+)
mrm2 mrm2 coding downstream 195226 35811037 ~ 35818586 (+)
zfand2a zfand2a,LOC107568938 coding downstream 950396 36566207 ~ 36580371 (+)
LOC103040671 galr2b,LOC103040671,LOC108433115,LOC107674614,LOC107753547,LOC107564701,LOC107703387 coding downstream 1036023 36651834 ~ 36677922 (+)
trnat-cgu_1 NA coding downstream 1262012 36877823 ~ 36877894 (+)
G202149 NA non-coding upstream 78831 35522542 ~ 35522770 (+)
G202147 NA non-coding upstream 90689 35510703 ~ 35510912 (+)
G202127 NA non-coding upstream 160040 35441286 ~ 35441561 (+)
G202086 NA non-coding upstream 187812 35413557 ~ 35413789 (+)
G202081 NA non-coding upstream 195749 35405618 ~ 35405852 (+)
G202163 NA non-coding downstream 35260 35651071 ~ 35680201 (+)
G202171 NA non-coding downstream 157488 35773299 ~ 35773919 (+)
G202174 NA non-coding downstream 178449 35794260 ~ 35795143 (+)
G202175 nudt1,LOC107592807,LOC107674605,LOC107758325 non-coding downstream 189753 35805564 ~ 35809425 (+)
G202178 NA non-coding downstream 203603 35819414 ~ 35820135 (+)
LOC111195488 NA other upstream 476983 35106038 ~ 35124618 (+)
psmg3 psmg3 other upstream 1786615 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 2326694 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 2623691 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 2673682 32923528 ~ 32927919 (+)
G202336 NA other downstream 973637 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 1367512 36983323 ~ 36993332 (+)

Expression


Co-expression Network