arpc1a (arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414)


Basic Information

Item Value
gene id arpc1a
gene name arpc1a,LOC107674705,LOC107591778,LOC107720063,LOC107703414
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34246152 ~ 34256116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247811.3
TCCAGAGTGTCGTTGCCATTTCCCGGATTCCTGGGCAGGCCGAGTTCAAGCGGAGCAGCCGGAGTGGATTCGTGTCGACTGGCCAGAGTCCGCGAATTCAAGTCCGTCCGAAAAGGCGAAGCAGCGGCGCGGCGTCTGCGGATATCTCACCTCCGCAACAACCATCCAGggctgcaaaaaaaaaaaagaaatacaagaaAATGTCACTCCACCAGTTTCTCTTGGAACCCATCACATGCCATGCATGGAACCGGGACAGGACTCAAATTGCTATCAGTCCAAACAATCACGAGGTTCATATATACAAGAAGAGTGGAAATCAGTGGGTGAAAGCTCACGAGTTAAAAGAACACAATGGGCACATCACAGGCATTGACTGGGCTCCTAAAAGCGATCGGATTGTAACCTGCGGAGCGGATCGCAATGCTTACGTGTGGAGCCAGAAGGACGGCGTTTGGAAGCCCACTCTTGTCATCCTCAGGATCAACCGTGCTGCCACGTTTGTGAAGTGGTCTCCACTGGAGAATAAGTTTGCAGTGGGCAGTGGAGCTCGCCTCATATCTGTTTGCTACTTTGAGTCTGAAAATGACTGgtggGTTAGCAAACACATCAAGAAGCCTATCCGCTCCACTGTCCTCAGTCTTGACTGGCATCCAAACAATGTACTTCTGGCAGCTGGGTCATGTGACTTTAAATGCAGGGTATTTTCTGCATACATCAAGGAGGTGGATGAAAAGCCAGCTCCAACTCCATGGGGGTCCAAGATGCCGTTTGGGCAGGTGATGGCAGAGTTTGGTGGGGCAGGCAGTGGAGGATGGGTCCACAGTGTCTGTTTCTCTGCCAGTGGGAACAGACTGGCCTGGGTCAGCCATGACAGCACTGTGACTGTGGTGGACCCCACGAAAAGCTCAACGCCAAGCCCACTGAAAACAGAATTCCTTGCTCTTCTGAGCGTCACCTTCGTTTCTGAGAACAACATTGTGGCAGCGGGTCATGACTGCTGCCCAATGCTGTTCAGCTTTGATGATGGTGGAACCTTGACCTTCATATCCAAGTTGGACATTCCAAAGCAGAGCATCCAGCGCAATATCTCTGCCATGGAGCGCTTCCGCAACATGGACAAGAGAGCCACCACTGAGGACCGCAATAGCACTCTGGAAACCCTTCACCAGAACAGCATCACCCAAGTGTCTATATATGAAGGAGACAAAAGAGATTGTCGCAAATTCTGCACTACAGGAATCGATGGAGCAATGACCATATGGGACTTTAAGACTTTAGAGTCCTCTATTCAAGGCCTACGGATCATGTGAAAGACCTCACTCTGAACTAGCACGACGCAGCGCAGGCAATGCAGCTTGAAGACTAACAAGGAGATTTCTGATAACACTTCTGAAAGTTtttaactgagaaaaaaaaagcactgaacAGTGGTGTGAGCTGACGTGACACtcttaaaaagaaacaaatgaaaaaaaaaatggaaaaacactAATGGAAAAGGGGGTTAgggtctttttttgtttattttgttttttttggggggcttttttttttttttttttattctatgccAAAGCTGGTGCTCCAGCAGTCTGACATTTGATCTTGGTGTTCTGGGGAACCAGAGAGGCGTTAAATTAAAGGAGAATTTTATGTAAATGGtctgctagaaataaatgaagtaTACTACACACCA

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247811.3 True 1699 mRNA 0.48 10 34246152 34256116

Neighbor

gene id symbol gene type direction distance location
LOC103025280 LOC108430595,LOC108256942,LOC105899944 coding upstream 2133 34206852 ~ 34244019 (+)
micall2 micall2,micall2a coding upstream 169639 34034500 ~ 34076513 (+)
LOC103027444 NA coding upstream 221950 34015702 ~ 34024202 (+)
ints1 ints1,LOC107703394,LOC107572041 coding upstream 247411 33939434 ~ 33998741 (+)
tmem184a tmem184a,LOC107581701,LOC107745595,LOC107674661 coding upstream 361507 33817531 ~ 33884645 (+)
arpc1b arpc1b,LOC107720102,LOC107591785,LOC107674599,LOC107581715 coding downstream 448 34256564 ~ 34271331 (+)
mmd2 mmd2,mmd2a,LOC107748164,LOC107674702,LOC107720066,LOC107581716 coding downstream 29971 34286087 ~ 34321859 (+)
card11 card11,LOC107592484 coding downstream 888159 35144275 ~ 35237634 (+)
gna12 gna12,gna12a,LOC107674729,LOC107758336,LOC107703403,LOC107753491 coding downstream 1006954 35263070 ~ 35336079 (+)
eif3b eif3b,eif3ba,LOC107703402,LOC107674692 coding downstream 1100637 35356753 ~ 35372601 (+)
G201805 LOC107720062,LOC107581717,LOC107591759,LOC107674676 non-coding upstream 51911 34161445 ~ 34194241 (+)
G201800 NA non-coding upstream 167401 34078541 ~ 34078751 (+)
G201786 NA non-coding upstream 220699 34024322 ~ 34025453 (+)
G201722 NA non-coding upstream 338674 33816101 ~ 33907478 (+)
G201830 NA non-coding downstream 51859 34307975 ~ 34309433 (+)
G201851 NA non-coding downstream 145481 34401597 ~ 34401908 (+)
G201824 LOC108257387 non-coding downstream 149505 34405621 ~ 34422325 (+)
G201859 NA non-coding downstream 177925 34434041 ~ 34436093 (+)
G201872 NA non-coding downstream 214190 34470306 ~ 34547849 (+)
psmg3 psmg3 other upstream 431166 33811432 ~ 33814986 (+)
G201466 LOC102799139,LOC107581721 other upstream 971245 33260173 ~ 33274907 (+)
bud31 bud31,LOC107737741,LOC107720055 other upstream 1268242 32974320 ~ 32977910 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other upstream 1318233 32923528 ~ 32927919 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other upstream 1958349 32269298 ~ 32287803 (+)
LOC111195488 NA other downstream 849922 35106038 ~ 35124618 (+)
G202336 NA other downstream 2333332 36589448 ~ 36940279 (+)
LOC103041887 NA other downstream 2727207 36983323 ~ 36993332 (+)

Expression


Co-expression Network