tfap2e (tfap2e)


Basic Information

Item Value
gene id tfap2e
gene name tfap2e
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 32196215 ~ 32211930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247880.3
GTCGGTGCTCTCACTCCGCGCTCTGCTGCGTGCCGCTCCATGCGCTTCTCCCTCTCCTCAATCCTCATCCTCCTCAAGGCAACATCAtctcatcagcagcagcatcatgctgtggaaaTCCCGAGCCAAGACTGATCCATACTGCATACAGggtccTGACCGGGCTGATGGAGTGTCCGGTTCCTCGCCTCCCTCCCGCCTCCCTCAGCTCTCCTCCTTCTCCGCGGCTCCTCCGCTGTGCCACACTCCATCCTCAGACTTCCAGCCCCCGTACTTCCCCCCGCCGTACCCCCAGGCCTCCCTGCCGTACCCCCAGAGCCAGGACGCGTCCTACCCGCACCTCCCCGACCCCTACCAGTCCCTGAGCTCCCTGCACCCATCCCAGCACCTGTCCCAGCACCTGCcccctcagcagcagcagcaacagcagcagcagtggctgTCCCAGCGGAGTCGTGTCGATGACGGGGGCCTGCTGCCCCACTCCCTGCGCCGGGACTACCCCACCGTGCCCCGGCTCCTGCACGGACTCGGCGAGGACGGTCCGATCGCGATGCATCACGGGATGGACGACCTCCAGGGGATGGAGGAGGCCTCCGCACTGGGGATTCTGGACCACTCAGTCATCAAGAAAGtTCCCATCCCCTCTAAGCTGAATGGCTCAGCTCTGTCCGTTCTGTCCCTGGGTAAGGATGGCCTGGGCCTGGGTGGTGTTTCTAACCCTGGAGAAGTTTTCTGCTCAGTTCCTGGACGCCTGTCCCTCCTCAGTTCCACATCCAAGTACAAGGTGACGGTGGGAGAGGTCCAGAGGAGGCTGAGCCCACCCGAGTGCCTCAATGCCTCGCTGTTAGGAGGAGTGCTGAGAAGAGCCAAGTCAAAGAACGGTGGCCGCTGTCTCCGGGAACGCCTGGAGAAGATCGGCCTGAATCTGCCTGCCGGCCGCCGCAAAGCAGCTAACGTCACACTTCTCACAGCGCTGGTTGAAGGTGAAGCAGTGCACCTGGCGAGGGACTTTGGCtatgtgtgtgagacagagttTCCAGCAAGAGCTACAGCAGAGTACTTGTGCAGGCAGAGCGATCCAGAGCAGCTTCCTACAAGGCGGAGCATGCTGCTGGCCACAAAGGAAATCTGTAAGGAGTTTATTGACCTGATGTCCCAGGACAGGTCGCCGCTGGGGGCCAGTCGACCCACGCCATGCCTGGAGCCCGGGGTGCAGGGCAGCCTGACCCACTTCAGCCTGCTGACCCACGGCTTCGGCACGCCAGCCATCTGCGCCGCCCTCTCCGCCTTCCAAAGCTACCTGCTGGAGGCCCTCAAAATGCTGGACAAAGGCGAGGGCGGCGGCAAGGGCCACCAGGAGAAAGAGCTCAAACACCGCAAATGAGGCTCCAGGACCTCtatcagagacagacagacaaacaaacagagacTGGACTCTTCCCCAGCCTTttagagtgagagtgtgagtgtatttatgtgcgtgtgtgtgggtaAGTATGTGCgtgcgtgagtgtgtgagagagagagagcgtgtgcAAGTTCGCCACTCAAGTCTGACTCAGAAGCAGCTGGGGTCAATTCTCTGCATCACAGGAGTTTGTGCCTGCGGGATATGTCTTCCTCTGGACACAGTGATGACTGACCACTGCTCCTCTTCTGCCCTGAGCAGGGTCCACTACTGCCCACTTCGCCACGTCATGTCCAACCAGGAGAGAATCTCACAAATCAGGATTTCTCAGTCTGTCAGAGAACTTAACCCCTTACCTTTTACATCGACAGacaacaataactataatacTATGTACTAATGTCTTAAATGATTGGTATGGATTCCCATCTAGTAACTGAATAATAAGTTAAAGGAGCTCACCCATCTAAATCCTTAAGAGGTGCCACCAAGGAAAGCTAAGTCCAGGTTCCttggattgaaaaaaaaaaaaaagatccctTAGGAAGCTTTACACACTGTGTTCAAGTCTCAtgatgaaccaatagaaatgctgcaaaaaatgtttttcacattGACTTTCTTCAACAAAACTATTGGATTTACAAGGAAGTAACCATTGGGAATAAGTTTGTTGTAGTAACAGTGTTTATTGTCCAGGAAACTTATATTTTCGAATAGAATTTGGGGCATGGCTGTGAggacttttagaaaaaaaagagtgtaaGTGAGGTCCCAAAAGTCATCTCTATTGGATGTATACATATTGGATGAAGCACCAATTATTCTAGAGACGAATTCCACTGCTCAATGCTGAGGGCTTTAAATGGGAATTCAATGCTGAGGGCTTTAAATGCATTCAACAGaagttataaatatttaaccaTACTTGGAATcaattctttttacattgacattgaAAATTTAGATGGTTCATTAGATTGGTACAACAgacaaaaaacacttaaatattGTCTTATTATTGGGTTATTTATCATAAGATATGAAGTTACATACATCTAGTCTGGTAAATAGGCCTTTACAGTGGGTTAAGTACCATTTTGTATTGGGCAGCTCTGTTTTAGGCTTCCGTACTCTATCCGTTGTCTATCCGTACTCTGAAATCCTGCTTTGTGAATCCCTCTTTGTGTACACTGGCCCTGTGTTTACTGCAGAACTGTAAACGGCAGCTAGAGATGGCGCACATCACTCAAggagtgtatttaaaaaaaaaacacaaatattgtcCTTTTGTACTCCCTGCTGTATGTTTATTATCAATGTTATTACTGTCCTTATCATTGCTGTATTTCAaggtaaatgtaatatattattaaaaacacaataacgGATGGTGTCGACCTGATACCTCTGGCATGAATTCTAAATCTA
>XM_007247881.3
GGGGTATAAGGGCCGGAGCGCTGAAGAACCAGGGCAGAACCGGCCTCCTGCACCCACTCTAACTCCACTAATGCCTCTCTGGGACTTTTACTGATTTATCCTGATTTATCTGGAGGATTGTTTTTCCTCTCCACACATTCACATCCACATACCCATGCTATTGCACACCTATTCCGCCATGggtccTGACCGGGCTGATGGAGTGTCCGGTTCCTCGCCTCCCTCCCGCCTCCCTCAGCTCTCCTCCTTCTCCGCGGCTCCTCCGCTGTGCCACACTCCATCCTCAGACTTCCAGCCCCCGTACTTCCCCCCGCCGTACCCCCAGGCCTCCCTGCCGTACCCCCAGAGCCAGGACGCGTCCTACCCGCACCTCCCCGACCCCTACCAGTCCCTGAGCTCCCTGCACCCATCCCAGCACCTGTCCCAGCACCTGCcccctcagcagcagcagcaacagcagcagcagtggctgTCCCAGCGGAGTCGTGTCGATGACGGGGGCCTGCTGCCCCACTCCCTGCGCCGGGACTACCCCACCGTGCCCCGGCTCCTGCACGGACTCGGCGAGGACGGTCCGATCGCGATGCATCACGGGATGGACGACCTCCAGGGGATGGAGGAGGCCTCCGCACTGGGGATTCTGGACCACTCAGTCATCAAGAAAGtTCCCATCCCCTCTAAGCTGAATGGCTCAGCTCTGTCCGTTCTGTCCCTGGGTAAGGATGGCCTGGGCCTGGGTGGTGTTTCTAACCCTGGAGAAGTTTTCTGCTCAGTTCCTGGACGCCTGTCCCTCCTCAGTTCCACATCCAAGTACAAGGTGACGGTGGGAGAGGTCCAGAGGAGGCTGAGCCCACCCGAGTGCCTCAATGCCTCGCTGTTAGGAGGAGTGCTGAGAAGAGCCAAGTCAAAGAACGGTGGCCGCTGTCTCCGGGAACGCCTGGAGAAGATCGGCCTGAATCTGCCTGCCGGCCGCCGCAAAGCAGCTAACGTCACACTTCTCACAGCGCTGGTTGAAGGTGAAGCAGTGCACCTGGCGAGGGACTTTGGCtatgtgtgtgagacagagttTCCAGCAAGAGCTACAGCAGAGTACTTGTGCAGGCAGAGCGATCCAGAGCAGCTTCCTACAAGGCGGAGCATGCTGCTGGCCACAAAGGAAATCTGTAAGGAGTTTATTGACCTGATGTCCCAGGACAGGTCGCCGCTGGGGGCCAGTCGACCCACGCCATGCCTGGAGCCCGGGGTGCAGGGCAGCCTGACCCACTTCAGCCTGCTGACCCACGGCTTCGGCACGCCAGCCATCTGCGCCGCCCTCTCCGCCTTCCAAAGCTACCTGCTGGAGGCCCTCAAAATGCTGGACAAAGGCGAGGGCGGCGGCAAGGGCCACCAGGAGAAAGAGCTCAAACACCGCAAATGAGGCTCCAGGACCTCtatcagagacagacagacaaacaaacagagacTGGACTCTTCCCCAGCCTTttagagtgagagtgtgagtgtatttatgtgcgtgtgtgtgggtaAGTATGTGCgtgcgtgagtgtgtgagagagagagagcgtgtgcAAGTTCGCCACTCAAGTCTGACTCAGAAGCAGCTGGGGTCAATTCTCTGCATCACAGGAGTTTGTGCCTGCGGGATATGTCTTCCTCTGGACACAGTGATGACTGACCACTGCTCCTCTTCTGCCCTGAGCAGGGTCCACTACTGCCCACTTCGCCACGTCATGTCCAACCAGGAGAGAATCTCACAAATCAGGATTTCTCAGTCTGTCAGAGAACTTAACCCCTTACCTTTTACATCGACAGacaacaataactataatacTATGTACTAATGTCTTAAATGATTGGTATGGATTCCCATCTAGTAACTGAATAATAAGTTAAAGGAGCTCACCCATCTAAATCCTTAAGAGGTGCCACCAAGGAAAGCTAAGTCCAGGTTCCttggattgaaaaaaaaaaaaaagatccctTAGGAAGCTTTACACACTGTGTTCAAGTCTCAtgatgaaccaatagaaatgctgcaaaaaatgtttttcacattGACTTTCTTCAACAAAACTATTGGATTTACAAGGAAGTAACCATTGGGAATAAGTTTGTTGTAGTAACAGTGTTTATTGTCCAGGAAACTTATATTTTCGAATAGAATTTGGGGCATGGCTGTGAggacttttagaaaaaaaagagtgtaaGTGAGGTCCCAAAAGTCATCTCTATTGGATGTATACATATTGGATGAAGCACCAATTATTCTAGAGACGAATTCCACTGCTCAATGCTGAGGGCTTTAAATGGGAATTCAATGCTGAGGGCTTTAAATGCATTCAACAGaagttataaatatttaaccaTACTTGGAATcaattctttttacattgacattgaAAATTTAGATGGTTCATTAGATTGGTACAACAgacaaaaaacacttaaatattGTCTTATTATTGGGTTATTTATCATAAGATATGAAGTTACATACATCTAGTCTGGTAAATAGGCCTTTACAGTGGGTTAAGTACCATTTTGTATTGGGCAGCTCTGTTTTAGGCTTCCGTACTCTATCCGTTGTCTATCCGTACTCTGAAATCCTGCTTTGTGAATCCCTCTTTGTGTACACTGGCCCTGTGTTTACTGCAGAACTGTAAACGGCAGCTAGAGATGGCGCACATCACTCAAggagtgtatttaaaaaaaaaacacaaatattgtcCTTTTGTACTCCCTGCTGTATGTTTATTATCAATGTTATTACTGTCCTTATCATTGCTGTATTTCAaggtaaatgtaatatattattaaaaacacaataacgGATGGTGTCGACCTGATACCTCTGGCATGAATTCTAAATCTA

Function

symbol description
tfap2e Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in nucleus. Is expressed in melanoblast; nervous system; and neural crest cell. Orthologous to human TFAP2E (transcription factor AP-2 epsilon).

NR:

description
transcription factor AP-2-epsilon isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09179 TFAP2E; transcription factor AP-2 epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247880.3 False 2842 mRNA 0.50 7 32196215 32211930
XM_007247881.3 True 2872 mRNA 0.50 7 32197236 32211930

Neighbor

gene id symbol gene type direction distance location
ncdn NA coding upstream 2432 32187157 ~ 32193783 (+)
LOC103047171 ext1,ext1c,LOC107592945,LOC107706241,LOC107654729,LOC107688378,LOC107754264 coding upstream 15679 32071645 ~ 32180536 (+)
trnaq-cug_20 NA coding upstream 764240 31431904 ~ 31431975 (+)
trnaq-cug_19 NA coding upstream 764573 31431571 ~ 31431642 (+)
trnaq-cug_18 NA coding upstream 764903 31431241 ~ 31431312 (+)
LOC103044735 LOC108430542,LOC107591984,LOC108257069,LOC107654683,LOC107592950,LOC107754258 coding downstream 80249 32292179 ~ 32295555 (+)
cdca8 cdca8 coding downstream 88444 32300374 ~ 32304369 (+)
prpsap2 prpsap2,LOC103393631 coding downstream 162587 32374517 ~ 32384819 (+)
epn2 epn2,LOC104959799 coding downstream 233690 32445620 ~ 32478713 (+)
LOC103038138 cacna1h,LOC108430574,LOC107703431,LOC106951959,LOC103151816,LOC102299227,LOC106914544 coding downstream 329797 32541727 ~ 32715442 (+)
G201281 LOC108430540,LOC102218321,LOC103154989,LOC108257141,LOC103371078,LOC103461361 non-coding upstream 9880 32181695 ~ 32186335 (+)
G201225 NA non-coding upstream 130508 32013078 ~ 32065707 (+)
G201206 NA non-coding upstream 256275 31939501 ~ 31939940 (+)
G201167 NA non-coding upstream 564462 31548349 ~ 31631753 (+)
G201163 NA non-coding upstream 744459 31441445 ~ 31451756 (+)
G201289 psmb2,LOC107591978,LOC107592948,LOC107688376 non-coding downstream 5204 32217134 ~ 32228952 (+)
G201287 NA non-coding downstream 42559 32254489 ~ 32260203 (+)
G201308 LOC108430568,LOC107567795 non-coding downstream 103305 32315235 ~ 32323517 (+)
G201314 LOC108430568 non-coding downstream 118948 32330878 ~ 32360359 (+)
G201333 b9d1,LOC107674617,LOC107737762,LOC107654544 non-coding downstream 267514 32479444 ~ 32486333 (+)
tpmt tpmt other upstream 128575 32053715 ~ 32067640 (+)
G201207 NA other upstream 209158 31942202 ~ 31987057 (+)
rbm24 rbm24,rbm24a,LOC107754275,LOC107592929 other upstream 1111582 31009926 ~ 31084633 (+)
G201018 NA other upstream 1181170 31012711 ~ 31015045 (+)
eloa tceb3 other upstream 2643331 29542748 ~ 29552884 (+)
LOC103043810 ago4,LOC106511154,LOC103043810 other downstream 57368 32269298 ~ 32287803 (+)
G201445 flii,LOC107581766,LOC107737969,LOC107703428,LOC107674686 other downstream 711598 32923528 ~ 32927919 (+)
bud31 bud31,LOC107737741,LOC107720055 other downstream 762390 32974320 ~ 32977910 (+)
G201466 LOC102799139,LOC107581721 other downstream 1048243 33260173 ~ 33274907 (+)
psmg3 psmg3 other downstream 1599502 33811432 ~ 33814986 (+)

Expression


Co-expression Network