LOC103034043


Basic Information

Item Value
gene id LOC103034043
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 24241364 ~ 24251389 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249264.3
TCCTGGTTTATTTCCTCAGTAACAGCGAGGCGTTCAGGCAGGAGAGATCTACTCAGGAGGAGAAACTCTTCAGACCAGGATCTATAGAACACAAACCCACACAGAGAGGGACAGGTGCAGAGGATGAGCAGAGGTGACTGGGGCTTTCTGGAGCGCCTGCTAATTGAAGGTCAGGAGTACTCGACAAACGTGGGACGGGTGTGGCTCACCGTGCTCTTTCTCTTTCGTATGCTCGTCTTGGGCACGGCAGCCGAGTCTGCCTGGGATGACGAACAGTCGGACTTCGTCTGCAACACCAAACAGCCCGGCTGCGAGGAGGTCTGCTATGACCAGGCATTTCCTCTCTCACACTTCCGCTACTTCGTGCTCCAGGTCATCTTCGTCTCCACGCCCACCATTTTCTACTTTGGCTACGTGGCTCTGAAGACGGGCAAGGAGCAGAAGCCGACCGAGCAGACTGTAGAGGAGCAGAGAGGAAGACAAAATGTTGGAAAATCCAAGCATAGTAAACTGGAGGTGATaaaggaggaggatgaggaagatgaGAAACAAGTGGAAAAGAAGACGAAGAGGCAGGAGGAGCCTCCTAAGCTGAAGGGCAGAATGCTTGGTGCGTATGCTGTAAGCACAGTGCTGAAGGTTGTGCTTGAGATTGGCTTCATTGTTGGTCTTTGGTTTCTTTACGGATTTGGATTTATAATTCCAGCTCAGTATGAGTGCCAGCGCTTTCCCTGCCCCCACACTGTGGACTGTTTTGTCTCTCGGCCAACTGAGAAGACCATTTTCACCATCTACACTCAAGTCATTGCTCTAGTTTCTGTTCTTCTGAACATTGTGGAGTTGCTGCATCTCCTTAAGCTGGCCATCACACACTGGTTGGAGAAGAAATACCAGTCTCAGGGGCTGGGGACATTTAGAGAGATCGAAAGGACCCCCACTGAACTGGAGCTCACAGAAGTTCAGGCTCCATCGTACGAGGAGAAGGGCCATCTCTTTCTCCCTGTAGGAAATGACAGTTACGGCCAGTCTGGCCACGAATGGACTGGTAGTGAGTCCTACCTAACAGCAGATATGCTTCCTAGCTACTCGAACTGTATTAGAAACAGCAACTACAGACATCACTCCAAAAAACACGCACACTCCAAAAAAGCCagcaaaaatgaccaaaaaggGAAGCACTCCAAAGACAAGCATTATGTATAAGACCAAAATggacaaattaaaaacattagctCGGTCCAGTTTAATGGATCCTGTTTTGGAACATCCAGAGGCGGAGGGGCTGAACATCCCCTGCTTTAGTCGTGGAACATTACTGTGAGGCGAACGCTGCTTCCCTTGTTTGGAAATGACTGTGCTCCCGGCAGAACTGCAGGACTGCCTTCCCCCAACAGCAGTTAAAGGTGACGGGGGTTAGGTGTAGCCAGCAAAATCTTAATAAGGACTCTTTACTTCAGCAATGTTGTTGATAATCAtcacacaaagaaaataaatgtgtgtgtctaGAGAGCGCAAGCGCCAAACGCGGTTAAAGTAGAGATAGAGGTAGAAATGAAGATAAAGGTAGATCATGGTACAACAGAAAGTAGCAAGTACGTGAATGTGTTTGTCATTACCTGTACATAAcaatgactgtaaaaaaaaacatgaatccTGTGGTTTCACTCCATTATGTTGCTTTCATAGAAATGAAGACAAAATTGTTTGCCCTGTGGCAAAATATGCAACCATAGTCTGTATAACTACTCATTTGGTAGACCCACCCACTTTTCCCAGACCAGGTGTGTCTCaaactgccttcattgagcCAATTTTGTCCAGTGAGTGTTATGTTCCAACAGTCAAAAAGTACAGTTAATATTAAAGTTAAGTTTGACTAAAACTTAGCTTAACAACAGCTGCAAACAGTCTGTTTCATCCACATTTAAAAACTGGTAtcttggtaaaataaaaaaaaaactgttggaatAAGACACAGGACATGAAAAGTCCATTAGATGGATTATAAGCTGTTTTGTCATTGAGACCTATAGGGATGGGTGAAGCTATATATCATACTGTTACCAGCAATCAGAGGAGTTAGACCTGTGGTGGCCTTACTTTTGAGACCCATTTCACTGTCCATGCttttttcagttattaatacacactatacatagATCAATACTTCAAAAAAGTTTTTAGTGGTCTCAGAACCTAAAAATCATATTCAGACAGATTTAATGTTactaaaataattgtttaaagaAACTTGAAATTGTTTAAAGACATTGACCAGCCAAACATGTGAATTCATTAAAGATGTATTTAAcagttaatattatttttatattttatactgaattttgtatttattctgtttagcTCTAATAAAGTTGTTAATTCATGTAA

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249264.3 True 2391 mRNA 0.43 2 24241364 24251389

Neighbor

gene id symbol gene type direction distance location
ilf2 ilf2,LOC105924049,LOC106569884 coding upstream 292371 23942554 ~ 23948993 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 309324 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 485807 23688512 ~ 23755557 (+)
mycl mycl coding upstream 556299 23678958 ~ 23685065 (+)
kiaa1522 NA coding upstream 654445 23486649 ~ 23586919 (+)
csmd2 csmd2,LOC107698986 coding downstream 396644 24648033 ~ 25075791 (+)
trappc3 trappc3 coding downstream 1119112 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 1165179 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 1278015 25529404 ~ 25560124 (+)
anln NA coding downstream 1316283 25567672 ~ 25579392 (+)
G199546 NA non-coding upstream 20750 24220361 ~ 24220614 (+)
G199469 NA non-coding upstream 67438 24121268 ~ 24173926 (+)
G199424 NA non-coding upstream 455405 23782931 ~ 23785959 (+)
G199436 NA non-coding upstream 470900 23769396 ~ 23770464 (+)
G199434 NA non-coding upstream 472932 23768206 ~ 23768432 (+)
G199588 NA non-coding downstream 186416 24437805 ~ 24438039 (+)
G199625 NA non-coding downstream 832595 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding downstream 860420 25111809 ~ 25112275 (+)
LOC103041709 NA non-coding downstream 1045653 25297042 ~ 25300856 (+)
G199669 NA non-coding downstream 1057253 25308642 ~ 25308947 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 1372107 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 2018328 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2858364 21358464 ~ 21383000 (+)
G198815 NA other upstream 3438474 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3966510 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1366539 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2334850 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 2580565 26831954 ~ 26892623 (+)
G200104 NA other downstream 3032831 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3053132 27304521 ~ 27305586 (+)

Expression


Co-expression Network