ilf2 (ilf2,LOC105924049,LOC106569884)


Basic Information

Item Value
gene id ilf2
gene name ilf2,LOC105924049,LOC106569884
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23942554 ~ 23948993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249265.2
TCCCCTGCTGCTCTTTCagctttagctcagctcagctcgtctcagcagcagcggcggctcCGGGTGCCGGTGACCCATTTTcatcttttctctgttttataaAGCTGCCAACACGTCTTACGCAATGAGAGGCGATCGTGGAAGGGGCCGTGGTGGTCGCTTCGGCTCCCGTGGAGGTCTAGTTCAGGGGTACCGCCCTTTTGTCCCACACATACCGTTTGACTTTTATGTTTGTGAGATGGCTTTTCCACGAGTGAAGCCGGCACCTGATGAGACTGCATTTAGTGAGGCTCTTCTGAAGCGCAACCAAGATCTCACTCCAACACCATCTGAGCAGTCTTCCATTTTGTCCTTGGTAACTAAGATTAACAACGTCATTGATAATTTGATTGTGGCACCTGGAAACTTTGAAGTGCAAATTGAGGAGGTGCGGCAAGTTGGCTCATACAAAAAGGGTACAATGACAACAGGACACAATGTAGCCGATCTTGTGGTTATTCTGAAGATTCTTCCTACTtTGGAGGCAGTTGCAGCCTTGGGAAACAAAGTGGTGGAGACTCTCCGCACCCAGGACCCAGCAGAGGtgctCTCTATGCTTACCAACGAGACTGGATTTGAGATCAGTTCTGCTGATGCTACAGTAAAGATCCTGATCACTACTGTCCCCCCTAATCTGCGCAAACTCGACCCAGAACTCCACCTTGACATCAAGGTGCTGCAGAGTGCTCTCGCTGCTATTCGCCATGCTCGCTGGTTTGAGGAGAATGCCTCACAGTCAACGGTGAAGGTTTTGATCCGCTTACTGAAAGACCTGCGAGTACGATTTCCAGGGTTTGAGCCTCTTACCCCCTGGATATTGGATCTCCTGGGACATTCTGCTGTCATGAATAACCCATCCAGACAGCCCCTTTCACTGAACGTTGCCTACAGGCGCTGTCTGCAGATGCTAGCAGCTGGGCTATTTCTGCCAGGCTCTGTAGGAATCACTGATCCATGTGAAAGTGGAAACTTCCGTGTGCACACTGTAATGACCCTAGAGCAGCAGGACATGGTATGTTTTACAGCCCAGACACTAGTGAGGGTCCTTTCTCACGGTGGCTACAGGAAGATCTTGGGACTTGAGGGCGATGCCAGCTATCTGGCCTCTGAGATGTCCACCTGGGACGGAGTGATCGTCACTCCATCTGAGAAAGCCTATGAGAAGCCTCCAGAGCGcaaggaagaggaggatgaagctttggaagagggaggagaaggagaagatgAAAGCATGGAGACACAGGAGTGATGTTTTTAAACTACACCAGACATCTGCCAGTTGTTTCCCATTCAACCCCCCAGGTCCCCAAGGCCTGTTCATCCTCTCTCCCCTTCTATGAATGTAGCCTGTGGCAGCAGACTATATGGACCAAAAGACACCAGCTGCACCAACCATCTATCTGCTGTCAGTCTCCTCAACCTGTGGCTTCTGTTTTACTAGGGGAGGGAAGTTGAACCCCCATCGGTTTCTAATGtggacttttgtttgttttttattttgtaccaGTAACTGATAaagtttttatttccttttattaCA
>XM_007249266.2
TCCCCTGCTGCTCTTTCagctttagctcagctcagctcgtctcagcagcagcggcggctcCGGGTGCCGGTGACCCATTTTcatcttttctctgttttataaAGCTGCCAACACGTCTTACGCAATGAGAGGCGATCGTGGAAGGGGCCGTGGTGGTCGCTTCGGCTCCCGTGGAGGTCTAGTTCAGGGGTACCGCCCTTTTGTCCCACACATACCGTTTGACTTTTATGTTTGTGAGATGGCTTTTCCACGAGTGAAGCCGGCACCTGATGAGACTGCATTTAGTGAGGCTCTTCTGAAGCGCAACCAAGATCTCACTCCAACACCATCTGAGCAGTCTTCCATTTTGTCCTTGGTAACTAAGATTAACAACGTCATTGATAATTTGATTGTGGCACCTGGAAACTTTGAAGTGCAAATTGAGGAGGTGCGGCAAGTTGGCTCATACAAAAAGGGTACAATGACAACAGGACACAATGTAGCCGATCTTGTGGTTATTCTGAAGATTCTTCCTACTtTGGAGGCAGTTGCAGCCTTGGGAAACAAAGTGGTGGAGACTCTCCGCACCCAGGACCCAGCAGAGGtgctCTCTATGCTTACCAACGAGACTGGATTTGAGATCAGTTCTGCTGATGCTACAGTAAAGATCCTGATCACTACTGTCCCCCCTAATCTGCGCAAACTCGACCCAGAACTCCACCTTGACATCAAGGTGCTGCAGAGTGCTCTCGCTGCTATTCGCCATGCTCGCTGGTTTGAGGAGAATGCCTCACAGTCAACGGTGAAGGTTTTGATCCGCTTACTGAAAGACCTGCGAGTACGATTTCCAGGGTTTGAGCCTCTTACCCCCTGGATATTGGATCTCCTGGGACATTCTGCTGTCATGAATAACCCATCCAGACAGCCCCTTTCACTGAACGTTGCCTACAGGCGCTGTCTGCAGATGCTAGCAGCTGGGCTATTTCTGCCAGGCTCTGTAGGAATCACTGATCCATGTGAAAGTGGAAACTTCCGTGTGCACACTGTAATGACCCTAGAGCAGCAGGACATGGTATGTTTTACAGCCCAGACACTAGTGAGGGTCCTTTCTCACGGTGGCTACAGGAAGATCTTGGGACTTGAGGGCGATGCCAGCTATCTGGCCTCTGAGATGTCCACCTGGGACGGAGTGATCGTCACTCCATCTGAGAAAGCCTATGAGAAGCCTCCAGAGCGcaaggaagaggaggatgaagctttggaagagggaggagaaggagaagatgAAAGCATGGAGACACAGGAGTGATGTTTTTAAACTACACCAGACATCTGCCAGGTCCCCAAGGCCTGTTCATCCTCTCTCCCCTTCTATGAATGTAGCCTGTGGCAGCAGACTATATGGACCAAAAGACACCAGCTGCACCAACCATCTATCTGCTGTCAGTCTCCTCAACCTGTGGCTTCTGTTTTACTAGGGGAGGGAAGTTGAACCCCCATCGGTTTCTAATGtggacttttgtttgttttttattttgtaccaGTAACTGATAaagtttttatttccttttattaCA

Function

symbol description
ilf2 Predicted to enable DNA binding activity and double-stranded RNA binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleolus. Is expressed in female organism. Orthologous to human ILF2 (interleukin enhancer binding factor 2).

NR:

description
interleukin enhancer-binding factor 2 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006955 immune response biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13089 ILF2; interleukin enhancer-binding factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249265.2 True 1579 mRNA 0.50 15 23942554 23948993
XM_007249266.2 False 1556 mRNA 0.50 15 23942554 23948993

Neighbor

gene id symbol gene type direction distance location
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding upstream 10514 23898683 ~ 23932040 (+)
trit1 trit1 coding upstream 186997 23688512 ~ 23755557 (+)
mycl mycl coding upstream 257489 23678958 ~ 23685065 (+)
kiaa1522 NA coding upstream 355635 23486649 ~ 23586919 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding upstream 465146 23471598 ~ 23477408 (+)
LOC103034043 NA coding downstream 292371 24241364 ~ 24251389 (+)
csmd2 csmd2,LOC107698986 coding downstream 699040 24648033 ~ 25075791 (+)
trappc3 trappc3 coding downstream 1421508 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 1467575 25416568 ~ 25526086 (+)
LOC103042327 ptp4a2,LOC103042327,LOC108257240,LOC105012508,LOC107564493,LOC107670276 coding downstream 1580411 25529404 ~ 25560124 (+)
G199424 NA non-coding upstream 156595 23782931 ~ 23785959 (+)
G199436 NA non-coding upstream 172090 23769396 ~ 23770464 (+)
G199434 NA non-coding upstream 174122 23768206 ~ 23768432 (+)
G199426 NA non-coding upstream 248741 23691498 ~ 23693813 (+)
G199417 NA non-coding upstream 301774 23640548 ~ 23640780 (+)
G199469 NA non-coding downstream 172275 24121268 ~ 24173926 (+)
G199546 NA non-coding downstream 271368 24220361 ~ 24220614 (+)
G199588 NA non-coding downstream 488812 24437805 ~ 24438039 (+)
G199625 NA non-coding downstream 1134991 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding downstream 1162816 25111809 ~ 25112275 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 1073297 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1719518 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2559554 21358464 ~ 21383000 (+)
G198815 NA other upstream 3139664 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3667700 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1668935 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2637246 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 2882961 26831954 ~ 26892623 (+)
G200104 NA other downstream 3335227 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3355528 27304521 ~ 27305586 (+)

Expression


Co-expression Network