hpcal4 (hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761)


Basic Information

Item Value
gene id hpcal4
gene name hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23898683 ~ 23932040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249268.2
GGAGATGCGGGCGCTCCATTCACTCTCGCTGtgactgaggaggaggaggaatcaGCAGCAGGTCCAGGGCTTTTCTCCGGGAAACAGCCCGCTGGTCTTCAGCCGCTGAGAGGATAACACACTTGTGTGAATcacacactcaaaacacacacacacaacacacacacatacatcaaaGACCGGCTACCTCACCAGAAAGAAATACTTGGGGAGGCCACAAAAATGGGGAAACATAACAGCAAGCTTGCTCCAGAGGTTCTGGATGACCTGACCAAGAACACAGAGTTCAATGAGGCAGAGCTGAAGCAGTGGTATAAGGGCTTCCTGAAGGACTGTCCCACTGGCATTCTCAATCTGGATGAGTTCCAGCAGCTCTACGTCAAGTTCTTCCCCTATGGCGATGCCTCCAAGTTTGCTCAGCATGCCTTCCGGACCTTTGACAAGAATGGAGACGGCACAATCGACTTCAGAGAGTTCATCTGTGCCCTGTCCATCACCTCCAGAGGAAGTTTTGAGCAGAAACTCAACTGGGCCTTTAACATGTATGACCTGGATGGAGATGGCAAGATTACACGTATGGAAATGCTTGAGATTATAGAGGCGATCTATAAAATGGTGGGCACAGTGATTATGATGCGTATGAACGAGGACGGCCTGACGCCACAGCAGCGCGTGGACAAGATCTTCAGCAAGATGGACAAAGATCACAATGACGAGATCACGCTGGAGGAGTTCAAAGAGGCAGCCAAGAGTGACCCCTCCATCGTCCTCTTACTGCAGTGTGACATGCAGAAGTAAGAGAGAGGAGGGGTGAGGGAAAGATggggctgaaataaaaaaatgtacagactTTTAAAAAGAAGCAGGTTAGGCCATGTTCACAAGGAACTTTTGGTTTCTATCAAAAATGCACCTCTTGCCATGATTTCAGTGAAGAAAATGTCTGAAAAGgcattttactgcatttaaaaaGCCTCTGTTGTTCGCTGGAAAAGTTTGCCAAAGTTTAACCTTTGACCGTGCGTCAGTCGCTGTTACGCAGGAGAGAGAA

Function

symbol description
hpcal4 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL4 (hippocalcin like 4).

NR:

description
PREDICTED: hippocalcin-like protein 4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23848 HPCAL4; hippocalcin-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249268.2 True 1051 mRNA 0.48 4 23898683 23932040

Neighbor

gene id symbol gene type direction distance location
trit1 trit1 coding upstream 143126 23688512 ~ 23755557 (+)
mycl mycl coding upstream 213618 23678958 ~ 23685065 (+)
kiaa1522 NA coding upstream 311764 23486649 ~ 23586919 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding upstream 421275 23471598 ~ 23477408 (+)
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding upstream 429152 23441994 ~ 23469531 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding downstream 10514 23942554 ~ 23948993 (+)
LOC103034043 NA coding downstream 309324 24241364 ~ 24251389 (+)
csmd2 csmd2,LOC107698986 coding downstream 715993 24648033 ~ 25075791 (+)
trappc3 trappc3 coding downstream 1438461 25370501 ~ 25377202 (+)
col8a2 col8a2,LOC107564494,LOC107724334,LOC107565043,LOC107710560 coding downstream 1484528 25416568 ~ 25526086 (+)
G199424 NA non-coding upstream 112724 23782931 ~ 23785959 (+)
G199436 NA non-coding upstream 128219 23769396 ~ 23770464 (+)
G199434 NA non-coding upstream 130251 23768206 ~ 23768432 (+)
G199426 NA non-coding upstream 204870 23691498 ~ 23693813 (+)
G199417 NA non-coding upstream 257903 23640548 ~ 23640780 (+)
G199469 NA non-coding downstream 189228 24121268 ~ 24173926 (+)
G199546 NA non-coding downstream 288321 24220361 ~ 24220614 (+)
G199588 NA non-coding downstream 505765 24437805 ~ 24438039 (+)
G199625 NA non-coding downstream 1151944 25083984 ~ 25299692 (+)
LOC111195489 NA non-coding downstream 1179769 25111809 ~ 25112275 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 1029426 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1675647 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2515683 21358464 ~ 21383000 (+)
G198815 NA other upstream 3095793 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3623829 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1685888 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2654199 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 2899914 26831954 ~ 26892623 (+)
G200104 NA other downstream 3352180 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3372481 27304521 ~ 27305586 (+)

Expression


Co-expression Network