mycl (mycl)


Basic Information

Item Value
gene id mycl
gene name mycl
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23678958 ~ 23685065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249274.3
GGAGTTGCTTGAAGGATCCAGAGTGAGTGAAGCCGCAGTGTGGCACTGAACTGTTCCTGCGTTCACGCCGGGACTCTTCACGCTCTTCCCTTTCGGAGAGACTGATCAGCTGAGCCTGAGAGAATACAGCGCTGCAGAGAAAGCACGGAGAGAGGAGGGAATTTTCTCCGGGACCTTTACTGTTTGTTGGAAAGCGCTTTTTCAGAGAATAatctgtgtgtaagagagagagagaaagtgctgGGAAAGaagtacagcagcagcagagtggAGCTCTGAACTGAGCTCAGCCCCAACAACAGAAGTCTCGCTGTGGATTTTTACGACTCAAATGTCTTGCAGGACACGGAGGCTGGGGATTAATTTAAGATCTTGTGTGCTGTGACCTGTGTTCACTCTGAAGTTGCACTGTTGAGCAGACCGATGCCAGGAATCAGTGCAAACCTTCCGCCTTGTGACAGGTGGGAGATGGAGGACTGTGATCAGTACCAACACTATTTCTACGATGACCACAACCTGGACGAGGATTTCTTCAAGTCCACCGCGCCTAGTGAGGACATTTGGAAGAAGTTCGAGCTTGTCCCAACCCCGCCCATGTCTCCCATCAGGACAGTGGAGGGTGCCAATGGGGCAGTGTATCCATCCCTAGGGGACAAGCTGGAGTGGGTGTCCCAGTTCTTGGGGCAGGACGAAGAGCACGAGGGACAATGTAAAGTCAGTGCGGAGAAGACTTTTGGTAACCTGAGCTCCATCATTATCCAGGACTGCATGTGGAGCAGCTTTTCTGCCAGCCAGCGGCTTGAGAAAGTGGTCAACGAGCGCTTGTCTTGCTCGGGGCAGTCCAAGCTGCCCTTTGCCCTCCAGACTAACTCCATGCACCCGAGCAAATCGCAGGTTGTCCCTGCAGATGCTGCGCCTGTGCTCAACAGCTTGGCCACGGATTGTGTGGATCCAGCGGCTGTCCTGACCTTCCctctgagcagcagcagctgcaagAAACAGGTGTCGTCTGGGTCAGAGTCACGCAGCGATTCTTCTGatgaggAGGAGATCGATGTGGTGACAGTAGAGCACAAGCACAAGTCGCGGCTGGTCAGTTCCCGTAAGCCGGTCACGATCACCGTGCGTGCTGACCCCTATGACCCTGGCATGAAGCGCTTTCACATCTCTATtcaccagcagcagcacaacTACGCCGCTCCCTCCCCCGACAGCCAGGTTGACGTAGAGCCCCCTCGCAAGAAAGTTCGCCAGGAGACTCCCCAACCACGGACAGGTTCCACACTGCACACTCCTGAGAGCAAACCCTACTTGTCTATTGCTGCTGTTTCCATGCCAGCACAGGCCATGCCTGCGTCCCCGCCCCACTCCTCATCCCACCACAGCCCCAAGTCCCAGCCATCCAGCCCTCAGAGCTCAGACAGCGAAGACATGGACAGGCGCAAGAACCACAACTTCCTGGAGCGCAAGAGACGCAACGACCTGCGCTCCCGCTTCCTGGCCTTGAGGGACGAGATTCCCAGTCTGATGGACTGTCCGAAGACACCAAAGGTGGTGATCCTGACCAAAGCGGCGGAGTACTTGCGTGCCCTGCACATTACTGACAAGCAAAAAGGCCATGAAAAGAAGCAGCTTAAGAACAGGCAGCAGCAGCTACTTCGAAGGCTAGCAGAACTAAAACGCTCCTAAAgttaaaaacaagataaaaaattGAGATATTTAAAAGCAAAGACACCTgtactttattttgtattattgtaatataaatattattgatttttttttgttttgtttgtttatttttgcacatttgCTTGTGGGCTTATGGAGAGGGCGACATGGATATTTGCAGACTAGTCAGTTGGTGTGTTATAGATTACATAAACTTCACTACGTTTCCCAAAGAAGGCCCTGCTGATTTGTTTATACCTTACGTAAAAGAGATGATTAAAGtgacccctttttttttttttttttttaaacatattagaACAATCCTAGTCGGGGACATTCTGTAACATTGAGTTAGCATGCCAGTTCGGCATTATTTGAAATGTAGCATTTAGCCTGTATGCACGTGTAGCTGCCCTAATTAACAGATTTCAGTGTGATggaatctgcaaaaaaaatcagatttcctAAGCTTAGTAAAACCTAAAACGTGTAATTGAATGCCCTGCTGTGCCATTACTAACATTTTCTTCAGATATTTCAAAGTGAAGTCTGTGGCCCACTGCAATATTTTGCCAGGACTAGAttttgacagacagacagggagtAGCACTGTTGTTAGccagctgtctgtctgtttgtctgtaaaGATCACatagaattcttttttttttttcctcttctattggtgcacattttgagTCGATGCCTTACACAGCCTTGCATTGTATATAAACTGTGACATATTTGTACATAATAGCTCTGCTGTAGATTCATGTGTAAAATACAGGTATATTATATATGCTTTCTGTTTTAATACCAAAATCAATGCTGTTGATTTGATTAACTTTTGTTTCCCCCCCTCCCTCATATATTCTGAAACTTGGTTGGCCCACTTGGCTTACTCTTATGAGTATATCAAAGCTTCTATTTTTGTTAAgaaaagttaaaacaaaaaggcatataaaaaaagaaaataaaatgacacTATCAACTTTACTTTGTATCACTAGCCACTTTGATGCTGTTTTCACTGCCTACTCATTTCATCTTgtggattttgttttttattttgctttgttttgggtgtgtaaaatctaaaaataggTTAGTCATAAATGTTAAAGAGACTTTTGTACTCTATTTTCCTACAGATTTCAGTATTTCTTTGTGTATGCAATATTtgctcttttttgtttgttcttttttgttcCCTCCCCATTGGTGGCATATGCTTTCTTTACCCATCACTAATGCTCATCTAATGTTAGAATTACAGTTCATAATCCGTTAGCTTGGTGCACCACCTTCACTTGTGTAGTATTGTGTTTCTCGACTTAATTGAATATATTCTAccaaagtatatttggaaaacCTTTTTAAGGTTTTCGAGGATAAATCAAGCCATGGTACTTGCACCCGGAATTAGTGTATAATCTCAGGTGTTTAATCAAATCagttcattaatttattaaattggctttttttttgtcattgatTCATAAAGTGCGTTTATAAAGTGGAAAATCTTTGTTGTAAGTAACTTTTGGTTTGTTTACtagacagagattaagcctagtcctagacTACATATCTCCATTCATGGTGCTGTATAGTCCAGTACTAGACCTTAACCCTGTCCAGCAAACCAACATTAAATTATACAAGCAGGACTCATTAAtgtctagtaaaaaaaaacagccccaGCGAAATATGTGGTAGCACTACACTGTAACTCACTCCACTAGACTCCTCCATTATCCTTAACTCACTTTCCTCAATGGTATATGCCGCCGTCAGCCTACTACTGTTTTGTTTGTCTTTGTTGTTCCTTTAAGAAAGAATGTGGTCTGATTTCTGTCCTGTTCGTCCTCCCCCCTGGTGTTGGACATTGTTTTGTACATTATTTGTCTAGTCCTTTCTTTCATGCTTGTTTTGCTCTCTCCTGGTGGCCACTGTGGGCACACACTGGGAGCGTGGCAGCAGCATTAAGCACTTTGTGTTCAGTACCTCATGAGCCTATAGAAGTCAGACAATTAATAAATTCAAATCAATCAAATGTG

Function

symbol description
mycl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of inner ear auditory receptor cell differentiation. Located in chromosome and nucleoplasm.

NR:

description
PREDICTED: protein L-Myc

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09110 LMYC, MYCL; L-myc proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249274.3 True 3734 mRNA 0.44 3 23678958 23685065

Neighbor

gene id symbol gene type direction distance location
kiaa1522 NA coding upstream 92039 23486649 ~ 23586919 (+)
rbbp4 rbbp4,LOC107584269,LOC107568807,LOC107709266 coding upstream 201550 23471598 ~ 23477408 (+)
bzw2 bzw2,LOC107709265,LOC107702135,LOC107724358 coding upstream 209427 23441994 ~ 23469531 (+)
LOC103041859 LOC103041859,LOC108425359,LOC107696203,LOC107584268,LOC107555559,LOC107702133,LOC107709262,LOC107724349 coding upstream 445955 23230207 ~ 23233003 (+)
scin scin,LOC107724348,LOC107702132,LOC107696204,LOC107709261 coding upstream 451887 23202682 ~ 23227071 (+)
trit1 trit1 coding downstream 3447 23688512 ~ 23755557 (+)
hpcal4 hpcal4,LOC107691524,LOC103358777,LOC107396335,LOC107562761 coding downstream 213618 23898683 ~ 23932040 (+)
ilf2 ilf2,LOC105924049,LOC106569884 coding downstream 257489 23942554 ~ 23948993 (+)
LOC103034043 NA coding downstream 556299 24241364 ~ 24251389 (+)
csmd2 csmd2,LOC107698986 coding downstream 962968 24648033 ~ 25075791 (+)
G199417 NA non-coding upstream 38178 23640548 ~ 23640780 (+)
G199378 yars,LOC107691530,LOC107568799,LOC107687080,LOC107724337,LOC107709269 non-coding upstream 85377 23587762 ~ 23593581 (+)
G199362 NA non-coding upstream 252874 23425878 ~ 23426084 (+)
G199337 NA non-coding upstream 342461 23336261 ~ 23336497 (+)
G199333 NA non-coding upstream 394534 23284140 ~ 23284424 (+)
G199426 NA non-coding downstream 6433 23691498 ~ 23693813 (+)
G199434 NA non-coding downstream 83141 23768206 ~ 23768432 (+)
G199436 NA non-coding downstream 84331 23769396 ~ 23770464 (+)
G199424 NA non-coding downstream 97866 23782931 ~ 23785959 (+)
G199469 NA non-coding downstream 436203 24121268 ~ 24173926 (+)
znf704 znf704,LOC107702114,LOC107555575,LOC107696217 other upstream 809701 22830231 ~ 22869257 (+)
G199091 stk3,LOC105907728,LOC107724280,LOC107702102 other upstream 1455922 22219265 ~ 22223036 (+)
LOC103037930 NA other upstream 2295958 21358464 ~ 21383000 (+)
G198815 NA other upstream 2876068 20802371 ~ 20802890 (+)
mrpl36 mrpl36 other upstream 3404104 20273021 ~ 20274854 (+)
ndufs5 ndufs5 other downstream 1932863 25617928 ~ 25620135 (+)
c23h18orf21 LOC103027551 other downstream 2901174 26586239 ~ 26613188 (+)
cdk6 cdk6,LOC107667775,LOC107567973,LOC107722162,LOC107558583,LOC106588946 other downstream 3146889 26831954 ~ 26892623 (+)
G200104 NA other downstream 3599155 27284220 ~ 27284567 (+)
LOC103023645 gngt1,LOC103023645,LOC108257427,LOC103152523,LOC103362787,LOC107085869 other downstream 3619456 27304521 ~ 27305586 (+)

Expression


Co-expression Network